Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq123 91.5 2e-13 >seq123 Length=1706507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/248 (69%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 162301 ACAGTTCAA-CCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATT 162359 |||| |||| ||| | || ||||| || || || ||||| ||||| |||||||| || Sbjct 34425 ACAGGTCAAACCAAAGGAGATATACAATCTTGGAGCTCAATCCCACGTGAAGGTTTCCTT 34484 Query 162360 TGA--TCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAA 162417 ||| |||| |||||||||||| || ||||| || || || || ||| || ||||| Sbjct 34485 TGAGCTCAG--TGAATACACAGCTCAAGTGGACGCGTTAGGAACCCTGAGGTTGTTAGAA 34542 Query 162418 GCCGTCCGTCTTCTTGGTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAG 162477 || || | | ||| | ||| | | | ||||||||| || ||| ||| Sbjct 34543 GCAGTGAGGGTAGCTGGCTTAGAAAAACAGACCAAAATCTACCAGGCATCTACCTCGGAG 34602 Query 162478 CTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCC 162537 || ||||| ||| ||| | ||| |||| |||| || || | ||||||||||| Sbjct 34603 CTCTATGGAAAAGTAGTGGAAATACCACAGACTGAAAAGACGCCGTTCTATCCACGATCG 34662 Query 162538 CCTTATGG 162545 |||||||| Sbjct 34663 CCTTATGG 34670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691395689472480