Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq21010 179 5e-43 seq46800 91.5 2e-16 >seq21010 Length=205 Score = 179 bits (198), Expect = 5e-43 Identities = 163/202 (81%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| |||||||||||||||||||| ||||||||| ||| | | ||| ||| ||||| Sbjct 3 CCTTCCAGCACCGGGCAGGCGTCAGTCCATATACATCGTCTTGC-GACTTAGCATGGACC 61 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT---CAAC 122 ||||||||||||||||||||||||| | || |||||||||||| || ||| | | Sbjct 62 TGTGTTTTTAGTAAACAGTCGCTTCTCCCTGGTCTCTGCGACCAAAACGCGCTAGCCCGC 121 Query 123 ACGTCG-TTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | | ||||| | || ||||||||||||||||||||||| |||||||||| | Sbjct 122 AAGGGGCTTCACGCACCTCGGTCCCCCTTCTCCCGAAGTTACGGGGGTATTTTGCCGAGT 181 Query 182 TCCTTAACCACAGTTCACCCGA 203 |||||||||| ||||| | ||| Sbjct 182 TCCTTAACCATAGTTCGCTCGA 203 >seq46800 Length=447 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 |||| | ||||| ||||||||||| | | |||||||| | ||||||||||| ||||| Sbjct 57 TGGCGTCTCTTCTTCCGAAGTTACGAGACTATTTTGCCTAGTTCCTTAACCATGATTCAC 116 Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | | |||||| ||||||| | ||| |||||||||||||| Sbjct 117 TCTAGCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693689151183