Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq99302 156 1e-35 seq104247 145 2e-32 >seq99302 Length=1777 Score = 156 bits (172), Expect = 1e-35 Identities = 92/96 (96%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1296 AGAGAGTCATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTGACA 1237 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||| ||||||| Sbjct 1236 TTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1201 Score = 118 bits (130), Expect = 3e-24 Identities = 65/65 (100%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1449 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 1390 Query 429 GCTAC 433 ||||| Sbjct 1389 GCTAC 1385 >seq104247 Length=1430 Score = 145 bits (160), Expect = 2e-32 Identities = 146/191 (76%), Gaps = 13/191 (7%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | || | Sbjct 1240 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGACGATAC 1299 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 1300 CAAACCGAGGTCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 1359 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 1360 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 1419 Query 339 TGGCTGTGGTT 349 ||||||||||| Sbjct 1420 TGGCTGTGGTT 1430 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 935 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 994 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 995 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633472067808