Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5256 217 2e-54 >seq5256 Length=3554119 Score = 217 bits (240), Expect = 2e-54 Identities = 216/282 (77%), Gaps = 37/282 (13%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3545261 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG 3545202 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA--------GCCAC 123 | |||| || | |||| |||||| |||||||||||||| ||| | Sbjct 3545201 C-TCAATCT-CGTGCGGCTCGAAGCCGCCGGTCCCTCTAAGAAGAATTTTAATACGCCGC 3545144 Query 124 CA------------ACCATAGTCG-----------ATGGGG----CTATTTAGCAGGTTA 156 || ||| || || |||| | |||||||||||| || Sbjct 3545143 CAGTGAGTTGCGCGACCGAAGCCGCGCACACCTAAATGGCGACGCCTATTTAGCAGGCTA 3545084 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3545083 GAGTCTCGTTCGTTACCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAT 3545024 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||||||||| | |||||||| Sbjct 3545023 GCACCACCACCCACCGAATCAAGAAAGAGCTGTTAATCTGTC 3544982 Score = 194 bits (214), Expect = 3e-47 Identities = 200/264 (76%), Gaps = 37/264 (14%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3545870 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG 3545811 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA--------GCCAC 123 | |||| || | |||| |||||| |||||||||||||| ||| | Sbjct 3545810 C-TCAATCT-CGTGCGGCTCGAAGCCGCCGGTCCCTCTAAGAAGAATTTTAATACGCCGC 3545753 Query 124 CA------------ACCATAGTCG-----------ATGGGG----CTATTTAGCAGGTTA 156 || ||| || || |||| | |||||||||||| || Sbjct 3545752 CAGTGAGTTGCGCGACCGAAGCCGCGCACACCTAAATGGCGACGCCTATTTAGCAGGCTA 3545693 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3545692 GAGTCTCGTTCGTTACCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAT 3545633 Query 217 GCACCACCACCCATAGAATCAAGA 240 ||||||||||||| ||||||||| Sbjct 3545632 GCACCACCACCCACCGAATCAAGA 3545609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796740231783