Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5256 396 8e-108 >seq5256 Length=3554119 Score = 396 bits (438), Expect = 8e-108 Identities = 409/534 (77%), Gaps = 31/534 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| || || | ||||| || ||||| ||||| | ||||||||| Sbjct 3544219 GTACTCATTCCGATTACGAGGCCTCGTAAGAGTCCCGTATCGTTATTTTTCGTCACTACC 3544160 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3544159 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 3544100 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 3544099 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGACAACCATGGT 3544040 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || | | ||||||||||||||||||| |||||| ||||||| || | ||||||| Sbjct 3544039 AGTCGCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 3543980 Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACC------AAGGA---------- 282 | | ||||||||| | ||||||| || ||| | || || Sbjct 3543979 ACTGGACCATGCGATCGGCAAAAGTTATCCAGATTCATCAAAATTAACGACTTCGAGCGC 3543920 Query 283 ------GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGT 332 || || | | || | | |||| |||||||||| ||| ||| || || Sbjct 3543919 GAGTCCGCACCCACCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGT 3543860 Query 333 CGGGGTTTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390 | | ||| | | |||||||||||||||||||||||||| |||||||| ||| ||| Sbjct 3543859 CAGAGTTCTGATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTA 3543800 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 ||| || ||| | ||||||| || |||||||||||| || || | || | | ||| Sbjct 3543799 AGATCTAAGGAACCAAAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCT 3543741 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3543740 TGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 3543687 Score = 343 bits (380), Expect = 4e-92 Identities = 360/473 (76%), Gaps = 30/473 (6%) Strand=Plus/Minus Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3543559 CCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3543500 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 3543499 TCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGACAACCATGGTA 3543440 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | | ||||||||||||||||||| |||||| ||||||| || | ||||||| Sbjct 3543439 GTCGCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGTA 3543380 Query 241 CAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACC------AAGGA----------- 282 | | ||||||||| | ||||||| || ||| | || || Sbjct 3543379 CTGGACCATGCGATCGGCAAAAGTTATCCAGATTCATCAAAATTAACGACTTCGAGCGCG 3543320 Query 283 -----GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGTC 333 || || | | || | | |||| |||||||||| ||| ||| || ||| Sbjct 3543319 AGTCCGCACCCACCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTC 3543260 Query 334 GGGGTTTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTAC 391 | ||| | | |||||||||||||||||||||||||| |||||||| ||| ||| Sbjct 3543259 AGAGTTCTGATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAA 3543200 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT 451 ||| || ||| | ||||||| || |||||||||||| || || | || | | |||| Sbjct 3543199 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCTT 3543141 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3543140 GCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 3543088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510283049728