Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2594 210 2e-49 >seq2594 Length=7326867 Score = 210 bits (232), Expect = 2e-49 Identities = 1110/1764 (63%), Gaps = 45/1764 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || |||||||| ||||| ||||| | || || | | ||| ||||| || || Sbjct 141654 ATCTACAGTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATACATTCCAGT 141595 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || ||| ||||| ||||| || || | ||||| | ||||| || | Sbjct 141594 CTTCAAACCCATTTTCCATGCATAAAAATGTATAGACGTCAATTTGCCGTAATTAGGGGC 141535 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 |||||||| ||||| || ||||| |||||||| || | || | |||||| ||||| Sbjct 141534 AGCCACATGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCTGCGGCCAT 141475 Query 65257 GTCAAT----GATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCT 65312 | ||| | | ||| || ||||||||||| || || |||| | | | | Sbjct 141474 TTGAATAGTTGTTTTGACT----GAAATCTCCCAGACAGTTTTATACAAGTCCCTGATTT 141419 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 | | ||||| ||||||| | || | || ||| | ||||||| | || || Sbjct 141418 CTTTAGGAATAGCCTCAATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTCA 141359 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | || ||||||| | || | | || | | ||| ||| |||| | |||| Sbjct 141358 TGTCTTCATCCCACAAATCTGCTTCTGTTAAATCCCGCAACAAATGATGATTTACCACTT 141299 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 | || || || |||||||| || | || || || || |||| || ||||| |||| Sbjct 141298 GAAATTCTCCAGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATT 141239 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 || |||| || || ||||| ||||| || ||||||||||| || || | | | ||| | Sbjct 141238 CATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAAT 141179 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | |||| ||| | | |||| || | ||| | | ||| | ||| | | | | | Sbjct 141178 TGCGCAGTCCATGTTTGGCAATTTTTTCCTTTAATACTTGCCAATCCCAAA--GATCTGT 141121 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | | | | |||||| || | || | | || ||| | || ||| Sbjct 141120 GGGAGTTTT----GTTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTACCTT 141065 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 || | || || || || | | | || | || || |||| || | || || Sbjct 141064 CATAAGTTTCATATACACCATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCAT 141005 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 ||||||| || || || || || |||| |||| | || ||| | || || || | Sbjct 141004 AATAAATAGTTTCAAATATTTGTTGATTCAGTTTAATAGCACTTTCGTTTTCATAAGGAA 140945 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | | ||||| ||||| ||||| || | ||| || || ||||| || || || | ||| | Sbjct 140944 TGCGCATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTC 140885 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 || ||| || | || || || || || || | |||| ||| ||||| ||||| Sbjct 140884 TCATATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCA 140825 Query 65913 AATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGAC 65972 || | || || | | | || || | || ||| ||| ||| | | Sbjct 140824 GGTTCTGAGTGACAATTTTA--GTCACTTCCTTAAGCTT---AATAAAATTGTAT-GTTT 140771 Query 65973 GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 ||| | | ||||||| | | |||| ||||| | ||||| || | Sbjct 140770 TATCATCATT---------CACAAACATATTTAACGCAATGGATGCCAAATTGCACACTG 140720 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 || | || || | || || ||||| |||||||| || |||| || ||||| || | Sbjct 140719 CTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTG 140660 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||||||||| | ||||||||||| | ||| || |||||||| || | ||| || || | Sbjct 140659 TGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTG 140600 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC---CG 66209 |||| || |||||||| | ||| || || || | ||| || | || || || | Sbjct 140599 TGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATTTGAGCTTTAACTTGCT 140540 Query 66210 T-ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | || || || | ||| |||| || | ||| ||||| || || |||||| Sbjct 140539 TGACATAACGTTTTTCCT----GTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCC 140484 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || || | || | ||| | | || || ||||| || ||| || ||| | Sbjct 140483 CAACAGTCTGCTAGTCCAGGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTC 140424 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || || || |||||||| ||| || ||||| | || ||||| || || | ||||| Sbjct 140423 TCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTG 140364 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 ||||| |||| ||||| || ||| || | || || || || || |||||||| Sbjct 140363 ACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAA 140304 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 || || | ||||| || || | || ||||| |||||||| || || || | Sbjct 140303 GGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTG 140244 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 || |||||| | ||||||||||| || || | || || || ||||| || || Sbjct 140243 GCAGTGTTGTTGTAAACACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCA 140184 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 | || || ||| ||| | || || |||| | |||||||||||| || | | Sbjct 140183 GCAATATAGGTGCCTTTTGCTCTAATGCAATGCACATGAACACCAATACCACCAGCTGAC 140124 Query 66629 TTCGAGATGGCAGCACAATCGGC----CACTGTCCGGAATATGCCGTCAATGGAGTCACC 66684 || || || ||||| | || | |||| |||| || |||||| |||| | Sbjct 140123 TTTGAAATCAATGCACATT--GCTTTAAAGTGTC--ATATATCCCCTCAATGCTGTCATC 140068 Query 66685 CTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAG 66744 || || | | || | || ||| | || ||| | || || || || | ||||| Sbjct 140067 TTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAG 140008 Query 66745 GGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGC 66804 || || | ||||| ||||| || | ||| | ||||||| || | ||| |||| Sbjct 140007 AGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAAATTGTATGTGTTGATAGCAGC 139948 Query 66805 ATCAATGTTTTCGCCATGAATCCC 66828 |||||| | ||| ||||| || || Sbjct 139947 ATCAATATCTTCACCATGTATTCC 139924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397530482377520