Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq181 174 3e-41 seq92 159 6e-37 seq104 141 2e-31 >seq181 Length=653437 Score = 174 bits (192), Expect = 3e-41 Identities = 214/288 (74%), Gaps = 11/288 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| | | ||| | |||||||||||| ||||||||||| || Sbjct 535163 TGCTCTTCAGTGAGTGTCGAGATGGGCCGACAATTTTACTTTGAACAAATTAGAGTGCTC 535222 Query 100 AAAGCAGGCCTT------TGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGC 152 ||||| ||| |||| ||||| | |||||||||||||||||| || | | Sbjct 535223 AAAGCGGGCTCAAAATGCTGCTTGAATATTTCGTGCATGGAATAATAGAATATGATCT-C 535281 Query 153 GGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 ||||||||||||||||||| || || || ||||||||||||||||||| ||||| Sbjct 535282 GGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTAATGATTAATAGGGATAACTGGGGGC 535341 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| ||| | ||||| Sbjct 535342 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGAACATCAGCGAA 535401 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | ||||||||| ||||| ||||||||||||| || Sbjct 535402 AGCATTTGCCAAAGGTGTTTTCATCAATCA-AGAACGAAAGTTAGAGG 535448 >seq92 Length=1037607 Score = 159 bits (176), Expect = 6e-37 Identities = 191/255 (75%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT------TGCTCGAATACATTA 126 |||||||||||| |||||||||| ||||||| ||| |||| ||||| | Sbjct 963824 TTTTACTTTGAACTAATTAGAGTGCTCAAAGCGGGCTCAAAATGCTGCTTGAATATTTCG 963765 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 ||||||||||||| |||| || | |||||||||||||||||||| || || || | Sbjct 963764 TGCATGGAATAATAAAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 963706 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||| ||||| | ||||| || |||||||||||||||| Sbjct 963705 TAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 963646 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||| ||| |||||||| || |||| | ||||||||| ||||| | Sbjct 963645 GATCGTCGCAAGACGAACATGAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-AG 963587 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 963586 AACGAAAGTTAGAGG 963572 >seq104 Length=942557 Score = 141 bits (156), Expect = 2e-31 Identities = 187/255 (73%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT------TGCTCGAATACATTA 126 |||||| ||||||||||||||||| ||||||| ||| |||| ||||| | Sbjct 627965 TTTTACCTTGAAAAAATTAGAGTGCTCAAAGCGGGCTCAAAGTGCTGCTTGAATATTTCG 628024 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 |||||||||||||||||| || | ||||||| ||||||| |||| || || || | Sbjct 628025 TGCATGGAATAATAGAATATGATCT-CGGTTCTGTTTTGTTAGTTTTCAGAACTCCGAGG 628083 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||| | ||||| | ||||| || | |||||||||||||| Sbjct 628084 TAATGATTAATAGGGACAACTGGGGGCTTTCGTATTGCGACGTTATAGGTGAAATTCTTG 628143 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||| ||| | |||||||| || |||| | ||| ||| ||||| | Sbjct 628144 GATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTAATCAACAATCA-AG 628202 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 628203 AACGAAAGTTAGAGG 628217 Score = 84.2 bits (92), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTA 185 |||||| |||||||||| || | ||||| |||||||||||||| || || | ||| Sbjct 628766 CATGGATTAATAGAATATGATCT-CGGTTATATTTTGTTGGTTTTCAGAACTCAGAGGTA 628824 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||||||||| |||| ||| || ||||| || |||||||||||||||||| Sbjct 628825 ATGATTAATAGAGATAACTGGGACATTC-GTATTGCGACGTTAGAGGTGAAATTCTTGGA 628883 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCG 274 | ||||| ||| | ||||||||| Sbjct 628884 TCGTCGCAAGACGAACATCAGCGAAAGCG 628912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915183581312