Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq486 417 6e-112 seq65 141 7e-29 >seq486 Length=217039 Score = 417 bits (462), Expect = 6e-112 Identities = 1187/1804 (66%), Gaps = 55/1804 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || ||||| |||| | ||| || | | ||| ||||| || ||| Sbjct 174759 TCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTCCAGTC 174818 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | ||| ||| ||||||||||| ||||||| |||||| |||| || || || Sbjct 174819 TTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTGGTTCT 174878 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || ||||| || || || || |||||||| || ||| || ||||||||| || ||||| Sbjct 174879 GCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCATT 174938 Query 65258 TCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | || | | | || | ||||||||||| || |||||||| || | || || | Sbjct 174939 TGGATTGTG-GTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATTTCTTT 174997 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATCG 65375 ||||| ||||| ||| | || ||| | ||| | ||||| |||| ||| Sbjct 174998 GGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTA-TAATGAGATTTTTCATAT 175056 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| ||| | ||| | |||| ||| || |||| | |||| || |||| Sbjct 175057 CATCATCCCATAAATCAGCCTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACCTGGA 175116 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || || || || | | || ||||| || |||| || ||||| |||||| Sbjct 175117 ATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCAT 175176 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||| ||||| || ||||| || || || |||||||| || | ||||| ||||| | Sbjct 175177 TGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGTTCC 175236 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615 ||| || | | | || || || || | ||||| ||||| ||| | | | Sbjct 175237 GCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACA--GGTCTGTGGG 175294 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGA 65675 | | | | | ||||| || | ||||| |||| ||||||||| |||| || | Sbjct 175295 TGTCTTTCCC----CACATTTCATATTGCAATATTCCTTCACTGGCCGGACAACC-AGCA 175349 Query 65676 AAC-TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 || | || || || || | | ||| |||| |||||| | || | || || || Sbjct 175350 TACGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAA 175409 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || ||||| || || || || |||| || | | || | || |||||||| || | Sbjct 175410 TAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGG 175469 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | ||||| ||||||| |||||||||||||| || ||||| ||||| || || || | | Sbjct 175470 CGCATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTC 175529 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 | || || | |||| || || || || |||||||| | ||||||||| |||| Sbjct 175530 ATGTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGG 175589 Query 65915 TTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGA 65974 || || | | | | || | || || |||||| | ||||| Sbjct 175590 TTCTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATA-TGTTTT------ 175642 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 | | ||| || |||| || | |||| || || | |||||| |||||| Sbjct 175643 -----ATTTTCGGTTAC---AAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCT 175694 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 | || |||| || || ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 175695 ACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTT 175754 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 |||||||||| |||||| ||||| | ||||||||||| ||||| | |||||| ||||| Sbjct 175755 CCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTT 175814 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCTTCACC 66208 || ||||| ||||| | |||||| || || | ||| | ||||||| | ||| Sbjct 175815 CCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCATAGGATTTGAGCGCG-GACTT---- 175869 Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | || |||||||| |||| || | | || | || || || ||| Sbjct 175870 -TTTTAACAAACCTACCTTCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCC 175928 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || || | || | || | | ||| || ||||| || ||| || | | ||| Sbjct 175929 CAACAATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGT--TGT 175986 Query 66329 TCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 ||| || | ||| |||||||| | ||||| || || ||||| || || || || | Sbjct 175987 TCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCGCGCGC 176046 Query 66387 GTTGCTCCTCAATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGC 66445 | ||||| || ||||| || || |||||| |||||||| || ||||| || ||| Sbjct 176047 GCACTTCCTCTTTGCCCGTG-TTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGC 176105 Query 66446 CATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAG 66505 || || || ||||||| |||||| | ||| || ||| ||| || ||||| |||||| Sbjct 176106 CACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAG 176165 Query 66506 CGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG 66565 || || |||||| | || |||| ||| || || |||||||| || ||| || ||| Sbjct 176166 CGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTG 176225 Query 66566 CCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCC 66625 || ||||| || ||| || | || ||||||| | || || || || || Sbjct 176226 CCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACATGAACTCCTATGCCGCCCGCG 176285 Query 66626 GTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCC 66685 | || || || ||||| | || || | | || || || ||| ||| || Sbjct 176286 GATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCC 176345 Query 66686 TTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGG 66745 || |||| | |||| | ||||| || || || ||| |||||||||||||| ||| Sbjct 176346 TTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCCGAGAACAGG 176405 Query 66746 GTGGGTGTAGCGTGCGTAAAGTAAT----GGCGAGACATGTAATTGTACGTCTCGATGAC 66801 ||||| | |||||||| ||||| | || ||| || | ||||| || |||| | Sbjct 176406 GTGGGGCTGGCGTGCGTGAAGTACTTCTCGGAGAG-CAGG---TTGTAGGTGGTGATGGC 176461 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTGCACA-TCGCATCAGGAGGTATTGAGGCC 66860 || || |||| |||| || || |||| || ||| |||||||| | || || |||| Sbjct 176462 GGCGTCGATGTCGGCGCCGTGGATGCCGA-TGGACACCCGCATCAGCATGTGCTGCGGCC 176520 Query 66861 GTTC 66864 | || Sbjct 176521 GCTC 176524 >seq65 Length=1244346 Score = 141 bits (156), Expect = 7e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 ||||| ||||| || |||||||| ||||| |||||||| ||||| || || || || | Sbjct 630802 GTGAAAGGCATTTTATCAAACATGTCTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTA 630861 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||||| | ||||| | ||| | ||||| ||||||||| | || || | || |||| Sbjct 630862 ATGAGAACCTTGTGGAAAGGTTCTCCCAGGAAGTGCAAGTGACTGAAGCTAGATGCTTCT 630921 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||| ||||| || |||||||||||||| || || || |||||| | || || || | Sbjct 630922 ACGGATTCCAAATCGCCATGGAGAATGTACATTCTGAAATGTACTCATTACTTATTGACA 630981 Query 61364 CGTACATCAGGGA 61376 | |||||||| || Sbjct 630982 CTTACATCAGAGA 630994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 |||||||||| | ||||| | || || ||| ||| || || ||||| | | | Sbjct 631474 TGTTCAATGCTGTTGAGACCCTTCCCTGTGTAAAGAAGAAGGCTGACTGGGCGATGCAGT 631533 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| ||| | || || ||||| |||||| || | | ||||| |||| || |||| Sbjct 631534 GGATCGGCAGCAAGACCGCAACATTCGGTGAAAGAATAGTAGCATTCGCGGCAGTTGAGG 631593 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || ||| ||| || || | ||||| ||| | || || | || || |||| Sbjct 631594 GCATCTTCTTCTCTGGCAGTTTCGCATCCATCTTCTGGCTTAAAAAGAGAGGGCTCATGC 631653 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 |||| ||||||||||||||||| ||||| || | || |||| Sbjct 631654 CCGGACTGACCTTCAGCAATGAATTGATCTCCAGAGATGAGG 631695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 61018 ACCAGCAAT--GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCG 61075 ||| ||||| || ||||| ||| ||||| || || || || || | ||||| || Sbjct 630402 ACCCGCAATTGGAGCCCCTGCTGCGTGAGAACCCGCGCCGGTTTGTGATCTTCCCGATTC 630461 Query 61076 AGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGG 61135 |||| | |||||||||| ||||||||||||||||||||||| |||||||| || || | Sbjct 630462 AGTACAAAGATATTTGGCAAATGTACAAAAAGGCGGAAGCTTCTTTCTGGACCGTTGAAG 630521 Query 61136 AGGTCGA 61142 | || || Sbjct 630522 AAGTTGA 630528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559307424160