Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq997 288 3e-73 seq960 113 2e-20 >seq997 Length=29618 Score = 288 bits (318), Expect = 3e-73 Identities = 370/508 (73%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 24557 CTGCCGTTCTGGCGCTG--ATTGGTGCAGGGGCGTCTGCGCCTGAAATCCTCGACCAGTT 24614 |||| ||||||| |||| ||||| | || || |||| | | ||| ||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTGG--CTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 24615 TCTGGATGAAAAGGAAGGTAACCACACCACAGCATACCGTGATGGTGCGGGTATCTGGAC 24674 |||| ||||||| || |||||| | ||| || ||| ||||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 24675 CATCTGCCGTGGAGCCACCCGGGGGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTC 24734 || ||||| || || || || ||| |||| || ||| | | |||||||| || | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 24735 GAAGGAAAAATGCGACCGGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 24794 ||| |||||| | | ||| || || || || || ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 24795 GAAAAACATCAGAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCC 24854 || || || ||||| |||||||| |||||||| || ||||| || |||||||| Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 24855 GTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGGATTAATGCAGG 24914 ||||||||| || || |||||||| |||||||| ||||| || | || || ||||| || Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 24915 AGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGGGACTG 24974 || || || || ||||| || |||||||||||||||| |||| |||| | ||||| Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 24975 CCG------TATTCGCTCAAATAA---CTGTTACGGTCAGGTATCCCGTCGTGACCAGGA 25025 ||| || || || || ||| |||||||||||| || || |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 25026 GAGCGCGCTGGCGTGCTGGGGAATCGAC 25053 || || ||||||||||||| || ||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 203 bits (224), Expect = 1e-47 Identities = 293/411 (71%), Gaps = 13/411 (3%) Strand=Plus/Minus Query 26124 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 26183 ||||| || || |||||||| |||||||||||| ||||||||||||| |||| ||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 26184 ---CTGGAACAGGCGAATGCCACCATTACTGGCATGCAGGTGCGCCAGCGTGATGTTGCT 26240 || ||||| || |||||||| | | ||||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 26241 GCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTG 26300 ||||| ||||| |||||| | | || || ||||||| || | | ||| |||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 26301 CGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACC 26360 | | ||||| ||||| |||||||| |||| | ||||||| | ||| ||| | | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAAC 17949 Query 26361 GTGCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGAC 26420 | ||| ||||||||| |||| ||| |||| |||||||| |||| | ||| Sbjct 17948 GG------AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 26421 ACCGCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTG 26480 ||||||||||||||||||||||||||||| | || | | ||| || ||||||| | Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 26481 GAAGGGGCACAGGACTATATCCGCACTCAGTGCCTGAACT-AAGTTTTGCT 26530 | ||| |||| || ||||||||||| | || | ||||||| || Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTTCT 17784 >seq960 Length=33163 Score = 113 bits (124), Expect = 2e-20 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 46051 AGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGCAT 46110 ||| || ||||||| ||||| ||||| || |||| | || || ||||||||| | Sbjct 13030 AGGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGACCTACAGCGGCGT 13089 Query 46111 CTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACAT 46170 |||||||||| | | || |||| | | | |||||||||||||| | | ||| | Sbjct 13090 GTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCT 13149 Query 46171 GCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAGTG 46230 |||| |||| ||| || ||| | || | | || || || | ||||||||||| Sbjct 13150 GCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCAGGTGGACAAGTG 13209 Query 46231 GGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCAC 46290 || |||||| ||| | ||||||||||||||| ||| | ||||| || ||||| Sbjct 13210 GGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCAC 13269 Query 46291 AGAGCCGCGGATGACCT 46307 |||||||| | |||| Sbjct 13270 CGAGCCGCGCTTTACCT 13286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175541860220424