Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_011356.1
Length=54896
Score E
Sequences producing significant alignments: (Bits) Value
seq997 288 3e-73
seq960 113 2e-20
>seq997
Length=29618
Score = 288 bits (318), Expect = 3e-73
Identities = 370/508 (73%), Gaps = 13/508 (3%)
Strand=Plus/Minus
Query 24557 CTGCCGTTCTGGCGCTG--ATTGGTGCAGGGGCGTCTGCGCCTGAAATCCTCGACCAGTT 24614
|||| ||||||| |||| ||||| | || || |||| | | ||| ||||| |||||
Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTGG--CTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843
Query 24615 TCTGGATGAAAAGGAAGGTAACCACACCACAGCATACCGTGATGGTGCGGGTATCTGGAC 24674
|||| ||||||| || |||||| | ||| || ||| ||||||| ||||| |||||
Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783
Query 24675 CATCTGCCGTGGAGCCACCCGGGGGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTC 24734
|| ||||| || || || || ||| |||| || ||| | | |||||||| || |
Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723
Query 24735 GAAGGAAAAATGCGACCGGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 24794
||| |||||| | | ||| || || || || || ||||||| ||||||||||| ||
Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663
Query 24795 GAAAAACATCAGAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCC 24854
|| || || ||||| |||||||| |||||||| || ||||| || ||||||||
Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603
Query 24855 GTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGGATTAATGCAGG 24914
||||||||| || || |||||||| |||||||| ||||| || | || || ||||| ||
Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543
Query 24915 AGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGGGACTG 24974
|| || || || ||||| || |||||||||||||||| |||| |||| | |||||
Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483
Query 24975 CCG------TATTCGCTCAAATAA---CTGTTACGGTCAGGTATCCCGTCGTGACCAGGA 25025
||| || || || || ||| |||||||||||| || || ||||||||
Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423
Query 25026 GAGCGCGCTGGCGTGCTGGGGAATCGAC 25053
|| || ||||||||||||| || |||
Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395
Score = 203 bits (224), Expect = 1e-47
Identities = 293/411 (71%), Gaps = 13/411 (3%)
Strand=Plus/Minus
Query 26124 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 26183
||||| || || |||||||| |||||||||||| ||||||||||||| |||| |||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129
Query 26184 ---CTGGAACAGGCGAATGCCACCATTACTGGCATGCAGGTGCGCCAGCGTGATGTTGCT 26240
|| ||||| || |||||||| | | ||||||| ||||||||||||| |||
Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069
Query 26241 GCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTG 26300
||||| ||||| |||||| | | || || ||||||| || | | ||| ||||
Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009
Query 26301 CGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACC 26360
| | ||||| ||||| |||||||| |||| | ||||||| | ||| ||| | |
Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAAC 17949
Query 26361 GTGCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGAC 26420
| ||| ||||||||| |||| ||| |||| |||||||| |||| | |||
Sbjct 17948 GG------AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895
Query 26421 ACCGCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTG 26480
||||||||||||||||||||||||||||| | || | | ||| || ||||||| |
Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835
Query 26481 GAAGGGGCACAGGACTATATCCGCACTCAGTGCCTGAACT-AAGTTTTGCT 26530
| ||| |||| || ||||||||||| | || | ||||||| ||
Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTTCT 17784
>seq960
Length=33163
Score = 113 bits (124), Expect = 2e-20
Identities = 179/257 (70%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 46051 AGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGCAT 46110
||| || ||||||| ||||| ||||| || |||| | || || ||||||||| |
Sbjct 13030 AGGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGACCTACAGCGGCGT 13089
Query 46111 CTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACAT 46170
|||||||||| | | || |||| | | | |||||||||||||| | | ||| |
Sbjct 13090 GTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCT 13149
Query 46171 GCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAGTG 46230
|||| |||| ||| || ||| | || | | || || || | |||||||||||
Sbjct 13150 GCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCAGGTGGACAAGTG 13209
Query 46231 GGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCAC 46290
|| |||||| ||| | ||||||||||||||| ||| | ||||| || |||||
Sbjct 13210 GGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCAC 13269
Query 46291 AGAGCCGCGGATGACCT 46307
|||||||| | ||||
Sbjct 13270 CGAGCCGCGCTTTACCT 13286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175541860220424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |