Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq960 143 1e-29 >seq960 Length=33163 Score = 143 bits (158), Expect = 1e-29 Identities = 286/418 (68%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 7087 GAAAGCGGCGTGCTGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGT 7146 ||| ||||| |||| || ||||| ||||| || ||| ||| || || | || Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403 Query 7147 GTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGC 7204 |||||| ||| |||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461 Query 7205 GCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTA 7264 |||| ||| || || || ||||| || ||||||||||| || | || ||||| | Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521 Query 7265 CGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGAT 7324 | || ||||| | || ||| | || ||||| || | || || || |||||| || Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTG--AT 18579 Query 7325 CAACATAT-CGCCA-GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCA 7382 | | | ||||| | |||||| ||||||| ||||||||| ||| |||||| | Sbjct 18580 CGCCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGA 18639 Query 7383 ACATCTGATAGTTGAGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCC 7442 || ||| | || || || | || | |||||||| | | |||||||| ||||| Sbjct 18640 GCACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCC 18699 Query 7443 TGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 7500 || || |||| | || ||||| || |||| ||||||||||| ||||||||| Sbjct 18700 GGACTACATCAACGGCCTGCGAGTGTTCGCGCTGCTCAACCAGTTCCGCCTGCAGTAC 18757 Score = 143 bits (158), Expect = 1e-29 Identities = 286/418 (68%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 46676 GAAAGCGGCGTGCTGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGT 46735 ||| ||||| |||| || ||||| ||||| || ||| ||| || || | || Sbjct 18344 GAAGGCGGCTACGTGCGCATCCAGCGTTCGATCACTACCTACCAGAAGAACGCTTTCGGC 18403 Query 46736 GTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGC 46793 |||||| ||| |||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 18404 CAGGCGGACAACTCCTACCTGGACAGCGAGACCCTGCA--CCAGTCGGCCTACATCGTGC 18461 Query 46794 GCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTA 46853 |||| ||| || || || ||||| || ||||||||||| || | || ||||| | Sbjct 18462 GCCGCCTGCAAAGCGTGATCACCAGCAAGTACGGGCGCCACAAGTTGGCCGCCGATGGCA 18521 Query 46854 CGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGAT 46913 | || ||||| | || ||| | || ||||| || | || || || |||||| || Sbjct 18522 CCCGCTTCGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATTCGCGGCGAGCTG--AT 18579 Query 46914 CAACATAT-CGCCA-GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCA 46971 | | | ||||| | |||||| ||||||| ||||||||| ||| |||||| | Sbjct 18580 CGCCCAGTACGCCAAGCTGGAGCTGGAAGGCCATGTGGAAAACGCCGAGCTGTTCGCCGA 18639 Query 46972 ACATCTGATAGTTGAGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCC 47031 || ||| | || || || | || | |||||||| | | |||||||| ||||| Sbjct 18640 GCACCTGGTGGTGGAACGCGATGCCCGGGACCCGAACCGCATCAACGTGCTGTTCCCGCC 18699 Query 47032 TGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 47089 || || |||| | || ||||| || |||| ||||||||||| ||||||||| Sbjct 18700 GGACTACATCAACGGCCTGCGAGTGTTCGCGCTGCTCAACCAGTTCCGCCTGCAGTAC 18757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247469789109424