Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4222 219 6e-55 seq1412 210 3e-52 seq3937 168 1e-39 seq4190 145 1e-32 >seq4222 Length=1518384 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 394730 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 394673 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 394672 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 394613 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 394612 ACCCGGGCCTTTCGGCCAGGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 394556 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 394555 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 394499 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 394498 AGCCGCCTGTCCCTCTAA 394481 >seq1412 Length=1057 Score = 210 bits (232), Expect = 3e-52 Identities = 187/227 (82%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGA-CTCGCGCTTACTAGGAATTT 59 |||||||||||||||||||| ||||||||||||| |||| |||||||||||| |||||| Sbjct 835 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGAACTCGCGCTTACTGGGAATT- 892 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118 ||||||| | | ||||||||||| | ||||| | ||||| | | |||| | | Sbjct 893 CCTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGT 952 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||||| ||| ||||||| || | || || ||| | | |||||||||||||||||| Sbjct 953 TACCCGGGCCTTTCGGCCAGGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGC 1009 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1010 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 1055 >seq3937 Length=228930 Score = 168 bits (186), Expect = 1e-39 Identities = 198/259 (76%), Gaps = 19/259 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTA-CTAGGAATTT 59 |||||||| | |||||| || ||||||| | ||| |||||||||||||| || |||||| Sbjct 106217 GTACAAAGAGAAGGGACATAATCAACGCAAACTT-ATGACTCGCGCTTAACTGGGAATT- 106160 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118 ||||||| | || ||||||||||| | ||||| | || || | | |||| | | Sbjct 106159 CCTCGTTCATGAGGAACAATTGCAAACCCCAATCCCTAACATGAAGGAGGTTCAGCGGGT 106100 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || ||||||| | || ||| | | |||||||||| ||||||| Sbjct 106099 TACTCGGGTCTTTCGGCCAGG----------CGCTGATTTCTTCAGTGTAGCACGCGTGC 106050 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 |||||||||||||||||||||||||||||||||||||| ||||| || |||| | |||| Sbjct 106049 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAA 105993 Query 238 AAGGC-CATCTCCCTCGAA 255 ||| | | | |||||| || Sbjct 105992 AAGCCGCCTGTCCCTCTAA 105974 Score = 102 bits (112), Expect = 1e-19 Identities = 140/191 (73%), Gaps = 16/191 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| |||||| ||||||||| ||| ||||||| |||||||| | Sbjct 164471 GTACAAAGGGCAGCGACGTAATCAACGCGAACTT-ATGACTC--------TAGGAATTGC 164521 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | | ||||||||||| | ||| | ||||| | | |||| | || Sbjct 164522 -TCGTTCATGGGGAACAATTGCAAGCCCCAATCTTTAGCACGAAGGAGGTTCAGCGGGTT 164580 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | |||| ||| ||||||| |||| || || ||| | |||||||||||||||| || Sbjct 164581 ATCCGGGCCTTTCGGCCA--GTGA---ACACGCTGATTCTTTCAGTGTAGCGCGCGTACG 164635 Query 180 GCCCAGAACAT 190 ||||||||||| Sbjct 164636 GCCCAGAACAT 164646 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||||||||||| | |||||||||||||| |||||||||||| | ||||| |||||| Sbjct 178483 AGTGTAGCGCGCGTGTGACCCAGAACATCTAAAGGCATCACAGACTTATTATT-CCTCAA 178425 Query 223 ACTTCCGTGGCCTAAAAGGCCATCT 247 || |||| | ||| |||| || Sbjct 178424 --TTTCGTGCGGTTAAAAGCCACCT 178402 >seq4190 Length=248667 Score = 145 bits (160), Expect = 1e-32 Identities = 171/226 (76%), Gaps = 14/226 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||| | ||||| ||||||| ||||| || ||||||| ||||| |||||| | Sbjct 222291 GTACAAAGGGCCCGAACGTAATCAACGCAAGCTT-ATAACTCGCGTTTACTGGGAATT-C 222234 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| || ||||| | |||| | | |||| | || Sbjct 222233 CTCGTTCATGGGGAACAATTGCAAGCCTCAATCCCTAGCACGTAGGAGGTTCAGCGGGTT 222174 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||||| || |||||||||| | || || ||| | ||||| ||| |||| Sbjct 222173 ACCCGGATCTTTCGGCCAAGGA---ACACACGCTGATCCCTTCAGTATAGTGCGCT---- 222121 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||||||||||||| ||||| || Sbjct 222120 ---CAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 222079 Score = 91.5 bits (100), Expect = 2e-16 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| || ||||||||| |||||| ||||||| Sbjct 109604 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTTATGACTCGCACTTACTGGGAATTT- 109661 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 |||||| | | ||||||| ||| Sbjct 109662 CTCGTTCATGGGGAACAATTTCAA 109685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751966161175