Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3937 138 2e-30 seq4190 75.2 2e-11 >seq3937 Length=228930 Score = 138 bits (152), Expect = 2e-30 Identities = 206/284 (73%), Gaps = 15/284 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | | || | || |||| | |||| ||||||||||| | Sbjct 105253 ATGCTCTTTACTGAGTGTCGAGTCGGGCTGGTACGTTTATTCTGAATAAATTAGAGTGCT 105312 Query 99 CAAAGCAGGCCTTTGCTCG----AATACATTA-GCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| | | |||| ||||| | |||||||||||| ||||||||| | | Sbjct 105313 TAAAGCAGGC-TATCCTCGTCTGAATACTGCATGCATGGAATAATGGAATAGGACTT-CT 105370 Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGT 210 ||||||||||||||||| | ||| | ||| |||||||||||||||| || | ||| Sbjct 105371 ATTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGAGGGC 105429 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| ||| ||| ||||||||||||||| |||| || ||||| Sbjct 105430 ATTCGTATTGTGATGTTAGAAGTGAAATTCTTGGATCGTCGCAAGATGGACAGAAGCGAA 105489 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 | || |||| |||||||||||||| | |||||||||||| Sbjct 105490 A---TTTGCCAAAAATGTTTTCATTAATTA-AGAACGAAAGTTA 105529 >seq4190 Length=248667 Score = 75.2 bits (82), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||| || ||||| | |||| ||| ||||||||||||||| Sbjct 221502 GTAATGATTAATAGGGACAGATGGGGGCATTCATATTGCGATGTAAGAGGTGAAATTCTT 221561 Query 243 GGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 || | || | ||||| || |||||| | || ||| |||||||||||||| | Sbjct 221562 AGA-TCATCGCAAGACGGACAGAAGCGAAAACATTTGTCAAAAATGTTTTCATTAATTA- 221619 Query 302 TGAACGAAAGTTAGGGG 318 |||||||| |||| || Sbjct 221620 AGAACGAAAATTAGAGG 221636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915157488960