Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3984 140 1e-30 seq3937 131 7e-28 seq3760 114 5e-23 seq4190 105 3e-20 seq3737 80.6 1e-12 >seq3984 Length=901249 Score = 140 bits (154), Expect = 1e-30 Identities = 119/144 (83%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| |||||||||||||| |||| |||||| | | ||||| ||||||| Sbjct 126794 GAGTCGGGTTGCTTGAGAATGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 126735 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 126734 AC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 126676 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 126675 GAGAGAGTTCAAGAGTACGTGAAA 126652 >seq3937 Length=228930 Score = 131 bits (144), Expect = 7e-28 Identities = 120/149 (81%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| |||||||||| || ||| |||||| | | ||||| ||||||| Sbjct 161838 GAGTCGGATTGCTTGAGAATGCAGCTTTACGTGGATGGTAAACTCCATCTAAGGCTAAAT 161779 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 161778 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 161720 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTT 187 |||||||| || || |||||||| |||| Sbjct 161719 GAGAGAGTTCAAGAGTACGTGAAACTGTT 161691 Score = 105 bits (116), Expect = 3e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||| |||||||||||||| ||| | || ||| |||||| ||| |||||| Sbjct 161030 ACCCGAAAGATAGTGAACTATGCCTGGTCAGGACGGAGTCAGGGGAAACCCTGATGGAGG 160971 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| ||||| |||||||||||||||| | ||| ||||||||||| Sbjct 160970 TCCGTAGCGATTCTGACGTGCAAATCGATCGTAGGAACTGGCTATAGGGGCGA 160918 >seq3760 Length=75518 Score = 114 bits (126), Expect = 5e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| ||| ||||| ||| |||||| ||| |||||| || Sbjct 46489 AAAGATGGTGAACTATGCCTGGTCAGGATGAAGTCAGGGGAAACCCTGATGGAGGTCCGT 46548 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||||| |||||||||||||||| | ||||||||||||||| Sbjct 46549 AGCGATTCTGACGTGCAAATCGATCGTAGGAACTGGGTATAGGGGCGA 46596 >seq4190 Length=248667 Score = 105 bits (116), Expect = 3e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | ||||||| || || |||| | |||||| |||||| || |||| |||||| Sbjct 103930 GAGTTGGATTGTTTGAGATTGAAGCTTTTAATGGGTGGTAAACTTTAAGTAAAACTAAAT 103871 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| | ||||| |||| ||||| |||| || |||||| | Sbjct 103870 ATGATCACGAGACCGATAGCGAAAAAGTACCGTGAAGGAAAGTTGAAGAGAACTTTGAAG 103811 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 103810 AGAGAGTTCAAGAGTACGTGAAA 103788 Score = 86.0 bits (94), Expect = 3e-14 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||| |||||||||||||| ||||| ||||||| ||| ||| |||| ||| Sbjct 103118 AGAGCATACACGTTGGGACCCGAAAAATGGTAAACTATGTCTGGTCAGGATGAAATCAGG 103059 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||| || |||| || || | ||||| | |||||||||||||| | ||||| Sbjct 103058 ATAAACCTTGATGGATATCCGTAGTGATTCTGACATGCAAATCGATCGTAGGAACTGGGT 102999 Query 674 ATAGGGGCGA 683 ||||||| || Sbjct 102998 ATAGGGGTGA 102989 Score = 86.0 bits (94), Expect = 3e-14 Identities = 87/114 (76%), Gaps = 11/114 (10%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||| ||||||||||| ||||||| ||| || ||| |||||| ||| Sbjct 225242 GTTGGGACTCGAAAGATGGTAAACTATGTCTG------GTCAAG-----GGAAACCCTGA 225290 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||| || || ||||||| |||||||||||||||| | |||||||||| Sbjct 225291 TGGAGGTTCTTAGTGGTTCTGACGTGCAAATCGATCGTAGGAACTGGGTATAGG 225344 >seq3737 Length=231529 Score = 80.6 bits (88), Expect = 1e-12 Identities = 96/130 (74%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||| ||||||||||||||||| | ||||||| ||| |||| |||| Sbjct 121570 AGAGCATACACATTGGGACCCGAAAGATGATAAACTATGGTC----AGGACGAAGTCAGA 121625 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||| ||| |||||| ||| |||| |||| || |||||||||||| | ||| | Sbjct 121626 CGAAATCCTGATGGAGGTTCGTAGCGATTCTAATGTACAAATCGATCGTAGGAACTGGAT 121685 Query 674 ATAGGGGCGA 683 ||||| |||| Sbjct 121686 ATAGGAGCGA 121695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079900364750