Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq3984 98.7 5e-19 seq1630 98.7 5e-19 seq4190 80.6 1e-13 >seq3984 Length=901249 Score = 98.7 bits (108), Expect = 5e-19 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||||||||| Sbjct 127017 GGAAAAGAAACTAACCAGGATTTCCTTAGTAGCGGCGAGCGAACAGGAAAGAGCCCAGCA 126958 Query 61 CCGAATCCC 69 ||||||||| Sbjct 126957 CCGAATCCC 126949 >seq1630 Length=1019 Score = 98.7 bits (108), Expect = 5e-19 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||||||||| Sbjct 921 GGAAAAGAAACTAACCAGGATTTCCTTAGTAGCGGCGAGCGAACAGGAAAGAGCCCAGCA 980 Query 61 CCGAATCCC 69 ||||||||| Sbjct 981 CCGAATCCC 989 >seq4190 Length=248667 Score = 80.6 bits (88), Expect = 1e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||| ||| ||| | || |||||| ||||| | ||||||||||| Sbjct 104143 GGAAAAGAAACTAACCAGAATTTCCTTAATAGCGGCGATCGAACACGAAAGAGCCCAGCA 104084 Query 61 CCGAATCCC 69 ||||||||| Sbjct 104083 CCGAATCCC 104075 Score = 71.6 bits (78), Expect = 6e-11 Identities = 56/67 (84%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||||||| ||||||||||| ||| ||| ||||||| ||||||| || || ||||| || Sbjct 224251 AAAAGAAAATAACCAGGATTTCCTTTGTAGCGGCGAGCGAACAGGAAACAGTCCAGCACC 224310 Query 63 GAATCCC 69 |||| || Sbjct 224311 GAATTCC 224317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230389966800