Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3937 174 3e-41 seq4222 122 1e-25 seq1412 107 3e-21 seq4190 93.3 7e-17 seq3933 84.2 3e-14 >seq3937 Length=228930 Score = 174 bits (192), Expect = 3e-41 Identities = 207/288 (72%), Gaps = 51/288 (18%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 106067 TCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-TC 106009 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC------------------ 117 || || | |||| ||||| |||||||||||||| Sbjct 106008 AATCT-CGTGCGGCTAAAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTTGGTAG 105950 Query 118 -----AGCCACCAACCATAGTCG-------------------ATGG---GGCTATTTAGC 150 | || || || || || | || | ||||||||| Sbjct 105949 TAAAAACCCGCCGGCCGAAGCCGGGAGCCTTCGCAATACCATAAGGTATGCCTATTTAGC 105890 Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||| || |||||||| ||| |||||||||||||||||| ||||||||||||||||| Sbjct 105889 AGGCTAGAGTCTCGTT----ATCAGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC 105834 Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 105833 GGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 105786 Score = 125 bits (138), Expect = 1e-26 Identities = 175/248 (71%), Gaps = 42/248 (17%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| | ||||||||||||||| | |||||||||||||| |||||||||||| | ||||| Sbjct 178489 TCCTTGAGTGTAGCGCGCGTGTGACCCAGAACATCTAAAGGCATCACAGACTTATTATT- 178431 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAG------------------- 112 |||| || ||| || | |||||| ||| ||||||| Sbjct 178430 CCTC-AATTTCGTGCGGTTAAAAGCCACCTGTCTCTCTAAGAAGATTTGTTTGTACGTTG 178372 Query 113 --------AAGCC--AGCCACCAACCATAGTCGAT-------GG---GGCTATTTAGCAG 152 ||||| |||| || | | |||| || | ||||||||||| Sbjct 178371 GTAGTAAAAAGCCGAAGCCGGGGGCCTTCG-CGATACCATAAGGTACGCCTATTTAGCAG 178313 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 178312 GCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG 178253 Query 213 CCATGCAC 220 |||||||| Sbjct 178252 CCATGCAC 178245 >seq4222 Length=1518384 Score = 122 bits (134), Expect = 1e-25 Identities = 91/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 394578 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 394519 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| |||||||||||||| Sbjct 394518 -CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAG 394477 >seq1412 Length=1057 Score = 107 bits (118), Expect = 3e-21 Identities = 66/69 (96%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 1047 Query 72 CCTCAAACT 80 ||||| || Sbjct 1048 -CTCAATCT 1055 >seq4190 Length=248667 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/117 (77%), Gaps = 14/117 (12%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | || ||||||| || ||||||||||||||| ||| ||||||| Sbjct 221973 CTATTTAGCAAGCTAGAATCTCGTT----ATTGGAATTAACCAGACACATCGTTCCACCA 221918 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| | || |||||| |||||||| |||||||||||||||||| Sbjct 221917 ACTAAGAATGACCGTGCACC----------GAATCAAGGAAGAGCTATCAATCTGTC 221871 >seq3933 Length=1230679 Score = 84.2 bits (92), Expect = 3e-14 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||||||| || || || |||| |||| ||||||| | | ||||| | ||||| Sbjct 302192 TATTTAGCAGACTAGAGTTTCATTCGCTATCAAAATTAACTAAATAAATCGTCCTACCAA 302133 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||| ||| ||||| || |||||| |||| ||||| ||| |||||||||| Sbjct 302132 CTAAGACCGGTTATGCATCATCACCCACCGAATGAAGAA--AGCCATCAATCTGT 302080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796764145245