Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4003 295 1e-77 seq3937 228 1e-57 seq4203 84.2 4e-14 seq3922 73.4 7e-11 >seq4003 Length=8567 Score = 295 bits (326), Expect = 1e-77 Identities = 218/252 (87%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 6862 TCATCAGTAGGGCAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 6803 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | |||||||||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 6802 TTGGCAGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 6743 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||| Sbjct 6742 CATCGAAGGATCAAAAAGCGACGTCACTATGAACGCTTG---GCCACAAGTCAGTTATCC 6686 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATA 268 ||||||||||||||||| ||||| | || ||| ||| | | | |||||||||||| Sbjct 6685 CTGTGGTAACTTTTCTGACACCTTTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGATA 6628 Query 269 GGCCACACTTTC 280 |||| ||||| Sbjct 6627 GGCCGTGCTTTC 6616 >seq3937 Length=228930 Score = 228 bits (252), Expect = 1e-57 Identities = 205/256 (80%), Gaps = 15/256 (6%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAAC-------CCAG----CT 79 ||||||||||||||||||||||| || ||| ||||||||||| | || || Sbjct 169792 TCATCAGTAGGGTAAAACTAACCAGTTTCACGACGGTCTAAAGTTCATGTCGAGTCTTCT 169851 Query 80 CACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATA 139 | ||| || || | | ||||| ||||| |||||| |||||||||||| | || ||| Sbjct 169852 CTGTTTCTCTGTTGGCGAGTGAAAAATCCGACGCTTGGCGAATTCTGCTTTGCAATAATA 169911 Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 169912 GAAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCTCCACAA 169971 Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT--TTCGAGGGACTA 257 ||||||||| |||||||||||| ||||| ||||||| || |||| ||| | | | | Sbjct 169972 GCCAGTTATTCCTGTGGTAACTCTTCTGACACCTCTTGCTGAAAATTCTTCAA--GCCAA 170029 Query 258 AAGGATCGATAGGCCA 273 ||||||| |||||||| Sbjct 170030 AAGGATCAATAGGCCA 170045 >seq4203 Length=1196433 Score = 84.2 bits (92), Expect = 4e-14 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||| |||||||||||||||||||||||||||||| Sbjct 56884 TACTGAGCAGGATTACTATCGCAATGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 56943 Query 60 ATGACGGTCTAAACCCAGCTC 80 | |||||||||| |||||||| Sbjct 56944 ACGACGGTCTAACCCCAGCTC 56964 >seq3922 Length=21742 Score = 73.4 bits (80), Expect = 7e-11 Identities = 61/72 (85%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGAC-GGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||| ||| |||| || | |||| ||||||||||||||||||||||| ||||||| Sbjct 16004 TACTAACAGGA-TTACTATCGCAACGACTGGTCATCAGTAGGGTAAAACTAATCTGTCTC 16062 Query 60 ATGACGGTCTAA 71 | |||||||||| Sbjct 16063 ACGACGGTCTAA 16074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854360313120