Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq4222 91.5 9e-17 seq1412 91.5 9e-17 seq3937 78.8 6e-13 seq4190 77.0 2e-12 >seq4222 Length=1518384 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 394779 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 394723 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 394722 GGCAGGGACGTAAT-CAACGCGAGCT 394698 >seq1412 Length=1057 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 786 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 842 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 843 GGCAGGGACGTAAT-CAACGCGAGCT 867 >seq3937 Length=228930 Score = 78.8 bits (86), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 106266 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 106210 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 | |||||| |||| |||||||| || Sbjct 106209 AGAAGGGACATAAT-CAACGCAAACT 106185 >seq4190 Length=248667 Score = 77.0 bits (84), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109 ||||||| |||| || |||| |||| |||||||||| ||||||||||||||||||||| Sbjct 109565 TCACTAAATCATT-CAATCGGCAGTA-GCGACGGGCGCTGTGTACAAAGGGCAGGGACGT 109622 Query 110 AATACAACGCAAG 122 ||| |||||| || Sbjct 109623 AAT-CAACGCGAG 109634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300786901100