Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01002034.1 Length=277 Score E Sequences producing significant alignments: (Bits) Value seq4161 91.5 2e-16 seq558 87.8 3e-15 seq4077 80.6 4e-13 seq3799 77.0 5e-12 >seq4161 Length=716925 Score = 91.5 bits (100), Expect = 2e-16 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||||||||||| |||| |||| |||||||| |||||| |||||||| || ||| Sbjct 628362 TTTTTGTTTGTGCTTTGATTGAAATTCAAGTTCATGTAC------AGGTTTATCATTAGT 628415 Query 89 ACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTG 125 | || |||| |||| || ||||||||| ||||||||| Sbjct 628416 ATTTTACGT-ACGTTACGCGTTACGGAAAAGCTTGTG 628451 >seq558 Length=29651 Score = 87.8 bits (96), Expect = 3e-15 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||||||||||| ||||||||| |||||||| |||||| |||||| | ||| | | Sbjct 28657 TTTTTGTTTGTGCCTTGACTGAAATTCAAGTTCATGTACAGGTTTATCATCATATT--TT 28600 Query 89 ACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTG 125 || | |||||| || || ||||||||| ||||||||| Sbjct 28599 ACGT-ACGTAATGTTACGCGTTACGGAAAAGCTTGTG 28564 Score = 77.0 bits (84), Expect = 5e-12 Identities = 77/100 (77%), Gaps = 9/100 (9%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||||||||| | ||||||||| |||||||| |||||| |||||||| |||||| Sbjct 18265 TTTTTGTTTGTTCTTTGACTGAAATTCAAGTTCATGTAC------AGGTTTATCATCAGT 18318 Query 89 ACTTAACG---TAACGTAACACGTTACGGAGAAGCTTGTG 125 | || ||| ||| || | ||||||| ||||||||| Sbjct 18319 ATTTTACGTTATAATGTTATGTCTTACGGAAAAGCTTGTG 18358 >seq4077 Length=194474 Score = 80.6 bits (88), Expect = 4e-13 Identities = 79/102 (77%), Gaps = 10/102 (10%) Strand=Plus/Minus Query 28 ATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAG 87 |||||||||||||| ||||||||| |||||||| || || ||||||||| ||||| Sbjct 135410 ATTTTTGTTTGTGCTTTGACTGAAATTCAAGTT------CGTGTATAGGTTTATCATCAG 135357 Query 88 TACTT----AACGTAACGTAACACGTTACGGAGAAGCTTGTG 125 || || |||||| || || | ||||||| |||||| || Sbjct 135356 TATTTTACCTACGTAATGTTACGCATTACGGAAAAGCTTCTG 135315 >seq3799 Length=388322 Score = 77.0 bits (84), Expect = 5e-12 Identities = 63/76 (83%), Gaps = 7/76 (9%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||| ||||||||||||||||| |||||||| |||||| || |||||||||||| Sbjct 358117 TTTTTATTTGTGCGTTGACTGAAATTCAAGTTCATGTAC------AGATTTATAATCAGT 358170 Query 89 ACTTAACGTAACGTAA 104 | || |||| |||||| Sbjct 358171 ATTTTACGT-ACGTAA 358185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787164577230