Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4222 228 2e-57 seq1412 206 5e-51 seq3937 174 3e-41 seq4190 145 1e-32 >seq4222 Length=1518384 Score = 228 bits (252), Expect = 2e-57 Identities = 208/258 (81%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 394477 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 394534 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 394535 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 394591 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 394592 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 394651 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 394652 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 394711 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 394712 ACGTCCCTGCCCTTTGTA 394729 >seq1412 Length=1057 Score = 206 bits (228), Expect = 5e-51 Identities = 182/224 (81%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 997 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| || || || || || |||||| |||| | |||||| | | || || Sbjct 996 ACTGAAGGAATCAGCGTGT---GTTCCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCT 940 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||| ||||| | | |||||||| || | | | |||||||||| || |||||| Sbjct 939 CCTTCGTGCTAGGGATTGGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAG 880 Query 286 CGCGTG-TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| | |||| ||| |||||||||||||||||||||||||||| Sbjct 879 CGCGAGTTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 836 >seq3937 Length=228930 Score = 174 bits (192), Expect = 3e-41 Identities = 199/259 (77%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| ||||| || | ||||| |||||||||||||||| Sbjct 105970 CTTCTTAGAGGGACAGGCGGCTTTTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 106027 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||||||||||| |||||||||| ||| || ||| | Sbjct 106028 ATGCCCTTAGATGTTCTGGGCCGCACGCGTGCTACACTGA-AGA---AA-----TCAGCG 106078 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| ||| | | |||| | | || ||| || || | ||||| | | ||| Sbjct 106079 CC-TGGCCGAAAGACCCGAGTAACCCGCTGAACCTCCTTCATGTTAGGGATTGGGGTTTG 106137 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAG-TAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||| || ||| | |||||||||| || || |||||||| ||||| || |||||||| Sbjct 106138 CAATTGTTCCTCATGAACGAGGAATTCCCAGTTAAGCGCGAGTCATAAGTTTGCGTTGAT 106197 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||| | ||||||| Sbjct 106198 TATGTCCCTTCTCTTTGTA 106216 Score = 113 bits (124), Expect = 9e-23 Identities = 137/188 (73%), Gaps = 13/188 (7%) Strand=Plus/Minus Query 141 ATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGG 200 ||||||||||||| |||||||||||||||| ||| || || ||||| |||||| Sbjct 164646 ATGTTCTGGGCCGTACGCGCGCTACACTGAAAGAATCAGCGTGTTCA-----CTGGCCGA 164592 Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 |||| | || ||| | | || ||| ||||||| ||| | | |||||||| || | Sbjct 164591 AAGGCCCGGATAACCCGCTGAACCTCCTTCGTGCTAAAGATTGGGGCTTGCAATTGTTCC 164532 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 | | |||||| ||| |||| | ||||| || ||||||||||||||| |||| Sbjct 164531 CCATGAACGAGCAATTCCTA--------GAGTCATAAGTTCGCGTTGATTACGTCGCTGC 164480 Query 321 CCTTTGTA 328 |||||||| Sbjct 164479 CCTTTGTA 164472 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 |||||| ||||| | |||||||||||| |||||||||||||| | ||||||||||||||| Sbjct 178425 TTGAGG-AATAATAAGTCTGTGATGCCTTTAGATGTTCTGGGTCACACGCGCGCTACACT 178483 >seq4190 Length=248667 Score = 145 bits (160), Expect = 1e-32 Identities = 190/258 (74%), Gaps = 14/258 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 222046 CTTCTTAGAGGGAAGG-CGACTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 222102 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||| || || ||| ||||| | || || || Sbjct 222103 ATGCCCTTAGATGTTCTGAGC-------GCACTATACTGAAGGGATCAGCGTGTGTT--- 222152 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| || |||||| | | || ||| |||||| ||||| ||| ||| Sbjct 222153 CCTTGGCCGAAAGATCCGGGTAACCCGCTGAACCTCCTACGTGCTAGGGATTGAGGCTTG 222212 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || ||||| |||| || || ||| ||||||||| Sbjct 222213 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAACGCGAGTTATAAGCTTGCGTTGATT 222272 Query 311 ACGTCCCTGCCCTTTGTA 328 |||| | |||||||||| Sbjct 222273 ACGTTCGGGCCCTTTGTA 222290 Score = 91.5 bits (100), Expect = 3e-16 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG-CATT 249 || |||| | |||| | || ||||| || ||| |||||| ||||| | | | || Sbjct 109742 CCCTGGCTGAAAGGCC-GGATAATCCGCCGAACCTCCTTCGTGCCAGGGATTGGGGCCTT 109684 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||| || | | | |||||| ||| || |||||| ||| ||||| | | ||||||||| Sbjct 109683 GAAATTGTTCCCCATGAACGAGAAATTCCCAGTAAGTGCGAGTCATAAACTCGCGTTGAT 109624 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 109623 TACGTCCCTGCCCTTTGTA 109605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947156002560