Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4190 197 5e-48 seq2767 174 5e-41 seq3395 165 3e-38 seq3937 138 4e-30 seq4003 118 3e-24 seq3737 116 1e-23 >seq4190 Length=248667 Score = 197 bits (218), Expect = 5e-48 Identities = 159/191 (83%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || ||||||| ||||||| | ||||||||||||||| ||| | | ||||||| Sbjct 248427 GAGTAAGTAAGGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTGCCATCTCCCAC 248368 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| ||| | ||| | | ||||||||||||||||||||||||| Sbjct 248367 TTATGCTACACCTCTCATGTCTCCTTACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTC 248308 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||| Sbjct 248307 TTCTTTCCCCGCTAATTTTTCCATGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAG 248248 Query 364 ATAGGGACAGT 374 ||||||||||| Sbjct 248247 ATAGGGACAGT 248237 Score = 181 bits (200), Expect = 3e-43 Identities = 162/202 (80%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 ||||| || || ||||||| ||||||| | ||||| |||||| || ||| | Sbjct 187475 TCCGCCCAATCGAGTAAGTAAGGAAACGATGAAAGTAGTAGTATTTTACCGGCGATGTTG 187416 Query 234 CGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | ||||||||||| |||||||||||| ||| | ||| | | |||||||||||||| Sbjct 187415 CCATCTCCCACTTATGCTACACCTCTCATGTCTACTTACAGTGCCAGACTAGAGTCAAGC 187356 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||| ||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||| Sbjct 187355 TCAATAGGATCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCG 187296 Query 353 CTAGATAGTAGATAGGGACAGT 374 ||||| |||||||||||||||| Sbjct 187295 CTAGACAGTAGATAGGGACAGT 187274 Score = 163 bits (180), Expect = 9e-38 Identities = 96/100 (96%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| | Sbjct 226909 CCTTAAGAGAGTCATAGTTAATCTCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGT 226850 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||||||||| Sbjct 226849 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 226810 Score = 161 bits (178), Expect = 3e-37 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 176872 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTCAATTTCTTCACATTGAC 176931 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||| Sbjct 176932 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 176968 Score = 140 bits (154), Expect = 1e-30 Identities = 95/108 (88%), Gaps = 9/108 (8%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC------ 488 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 101464 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTTTTCACATTG 101523 Query 489 ---ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||||||||||||||||||||||||||||| |||||||||||| Sbjct 101524 ACAACGTTGACATTCAGAGCACTGGGCAGAAATCATATTGCGTCAACA 101571 Score = 131 bits (144), Expect = 5e-28 Identities = 74/75 (99%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173039 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 173098 Query 418 CGAGGCATTTGGCTA 432 |||||||||||| || Sbjct 173099 CGAGGCATTTGGTTA 173113 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 187699 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 187640 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 187639 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 187580 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 248662 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 248603 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 248602 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 248543 Score = 109 bits (120), Expect = 2e-21 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTC-GTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||| Sbjct 93581 AGTAGACAGGGACAGTGGGAATCTCAGTTAATCCATTCATGCGCATCACTAGTTAGATGA 93640 Query 418 CGAGGCATTTGGCTA 432 |||||||||||| || Sbjct 93641 CGAGGCATTTGGTTA 93655 Score = 100 bits (110), Expect = 9e-19 Identities = 67/74 (91%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||| ||||| ||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 153654 AGTAAATAGGAACAGTGGGAATCTCGTTAATCCATTGATGCG---CATTAATTAGATGAC 153710 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 153711 GAGGCATTTGGCTA 153724 >seq2767 Length=3955 Score = 174 bits (192), Expect = 5e-41 Identities = 99/101 (98%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 3545 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGT 3604 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||| Sbjct 3605 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 3645 >seq3395 Length=1803 Score = 165 bits (182), Expect = 3e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 1093 CCTTAAGAGAGTCACAGTTACTTCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGT 1152 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1153 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 1193 >seq3937 Length=228930 Score = 138 bits (152), Expect = 4e-30 Identities = 92/102 (90%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||| ||||||||||| ||| |||||||||||||||||| |||||||||| || Sbjct 153290 CCTTAAGAAAGTCATAGTTATTCCGGCCGTTTACCCGCGCTTGCTTGAATTTCT----TT 153345 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||||||||||| ||||||||||||||||||| ||||||||| Sbjct 153346 TGACATTCAGAGGACTGGGCAGAAATCACATTACGTCAACAT 153387 Score = 138 bits (152), Expect = 4e-30 Identities = 150/196 (77%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||||| || || ||||||| ||||||| | |||| |||||||||| ||| | Sbjct 170268 TCCGCT-CAACGAGTAAGTAAGGAAACGATGAAAATAGTAGTATTTCACTGGCGATGTTG 170326 Query 234 CGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | |||||| |||| || |||| ||| | ||| || |||||||||||||| Sbjct 170327 CCATCTCCCATTTATACT------CTCATGTCTCCTTACAGTATCAGACTAGAGTCAAGC 170380 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| Sbjct 170381 TCAACAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGC---AGTTTCG 170437 Query 353 CTAGATAGTAGATAGG 368 ||||||||||| |||| Sbjct 170438 CTAGATAGTAGGTAGG 170453 Score = 122 bits (134), Expect = 3e-25 Identities = 80/88 (91%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 ||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||| Sbjct 113064 ATAGTTACTCCCG---TTTACCCGCGCTTGCTTGAATTTCTTTACGTTGACATTGAGAGC 113008 Query 506 ACTGGGCAGAAATCACATTGCGTCAACA 533 | |||||||||||||||||||||||||| Sbjct 113007 ATTGGGCAGAAATCACATTGCGTCAACA 112980 Score = 107 bits (118), Expect = 6e-21 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || |||| ||| ||| | |||||||| |||||||||||||||||||||||||||||||| Sbjct 80206 GAGAGTAAATAAGGATAACGGGAATCTTGTTAATCCATTCATGCGCGTCACTAATTAGAT 80147 Query 416 GACGAGGCATTTGGCTA 432 ||||||||||||||||| Sbjct 80146 GACGAGGCATTTGGCTA 80130 Score = 107 bits (118), Expect = 6e-21 Identities = 71/78 (91%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||| | Sbjct 172668 AGAGAGTAGATAGGGACAGTGGAAATAT---TAATCCATTCATGCGCGTCACTAATTACA 172724 Query 415 TGACGAGGCATTTGGCTA 432 |||||||||||||||||| Sbjct 172725 TGACGAGGCATTTGGCTA 172742 Score = 98.7 bits (108), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 4/75 (5%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG-TCACTAATTAGATGA 417 ||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| Sbjct 147595 AGTAGATAGGGACAGTGAGAATTTCGTTAATCCATTCATGCGCGTTCATTAATTAGAT-- 147652 Query 418 CGAGGCATTTGGCTA 432 |||||||||||||| Sbjct 147653 -GAGGCATTTGGCTA 147666 >seq4003 Length=8567 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 6569 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 6510 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 6509 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 6450 >seq3737 Length=231529 Score = 116 bits (128), Expect = 1e-23 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||| | ||| |||||||||||| |||| ||| ||| | |||||||||||||| ||||| Sbjct 122679 AAGAAAATCACGGTTACTCCCGCCATTTATCCGTGCTGGCTTGAATTTCTTCACGTTGAC 122620 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| | |||||| ||||||||||||||| Sbjct 122619 ATTCAGAGCACTAGACAGAAACCACATTGCGTCAACA 122583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635124044960