Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3392 435 9e-120 seq4644 434 3e-119 seq1567 426 5e-117 seq3937 190 6e-46 >seq3392 Length=1242 Score = 435 bits (482), Expect = 9e-120 Identities = 422/538 (78%), Gaps = 37/538 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 255 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 314 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 374 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 375 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 434 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 435 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 494 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCCCGA 289 | ||| || |||||| | |||||||| || ||||||| || | | || Sbjct 495 GCTAAGACCGTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAATAAACGGTGGACGGA 554 Query 290 AGG-------------GCGTTGGTTTTTTATCTAATAAA----TACACCCCTTCCGAAGT 332 || || | | |||| |||||||||| | | ||| || || Sbjct 555 CGGAGACCGCTCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTCCCATCACTGGT 614 Query 333 CGGG---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGG 388 |||| | ||| |||||||||||||||||||||||||| |||||||| || | | || Sbjct 615 CGGGACTCTGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGG 674 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT- 447 ||| ||| ||| ||| ||||||||||||||||||||||||| ||||||| || ||| Sbjct 675 TACAATCTAATGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA---ATTC 731 Query 448 -GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 GGCATGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 789 >seq4644 Length=1011 Score = 434 bits (480), Expect = 3e-119 Identities = 423/540 (78%), Gaps = 40/540 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 84 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 143 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 203 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 204 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 263 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 264 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 323 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCCCGA 289 | ||| || |||||| | |||||||| || ||||||| || | | || Sbjct 324 GCTAAGACCGTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAATAAACGGTGGACGGA 383 Query 290 AGG-------------GCGTTGGTTTTTTATCTAATAAA----TACACCCCTTCCGAAGT 332 || || | | |||| |||||||||| | | ||| || || Sbjct 384 CGGAGACCGCTCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTCCCATCACTGGT 443 Query 333 CGGG---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAA 386 |||| | ||| |||||||||||||||||||||||||| |||||||| ||| || Sbjct 444 CGGGACTCTGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT-G 502 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 ||||| ||| ||| ||| ||||||||||||||||||||||||| ||||||| || || Sbjct 503 GGTACAATCTAATGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA---AT 559 Query 447 T--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 TCGGCATGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 619 >seq1567 Length=1073 Score = 426 bits (472), Expect = 5e-117 Identities = 423/541 (78%), Gaps = 41/541 (8%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 52 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 111 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 171 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 172 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 231 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 232 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 291 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCCCGA 289 | ||| || |||||| | |||||||| || ||||||| || | | || Sbjct 292 GCTAAGACCGTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAATAAACGGTGGACGGA 351 Query 290 AGG-------------GCGTTGGTTTTTTATCTAATAAA----TACACCCCTTCCGAAGT 332 || || | | |||| |||||||||| | | ||| || || Sbjct 352 CGGAGACCGCTCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTCCCATCACTGGT 411 Query 333 CGGG---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAA 386 |||| | ||| |||||||||||||||||||||||||| |||||||| ||| || Sbjct 412 CGGGACTCTGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT-G 470 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATG-AGCCATTCGCAGTTTCACTGTATAGA 445 ||||| ||| ||| ||| ||||||||||||||| |||||||||| ||||||| || | Sbjct 471 GGTACAATCTAATGAACCATAACTGATTTAATGTAGCCATTCGCGGTTTCACCTTA---A 527 Query 446 TT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || || | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 TTCGGCATGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 587 Query 504 G 504 | Sbjct 588 G 588 >seq3937 Length=228930 Score = 190 bits (210), Expect = 6e-46 Identities = 358/516 (69%), Gaps = 58/516 (11%) Strand=Plus/Minus Query 36 GTATCAGTATTTATTGTCAC-TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| ||||| ||||||| || |||| |||| | ||| | | ||||||||| |||| | Sbjct 104989 GTATCGTTATTTTTTGTCACCTATCTCCTCGTGCCAGGAGTAGATAATTTGCGGGCCTAC 104930 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| Sbjct 104929 TGCCTTCCTTGGATGTGATAGCCGTTTCTCAGGCTCCCTCTCTGGAATCGAACCTTGATT 104870 Query 155 CCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214 | || ||| ||||| |||||||||||| | ||||||||||| | ||||| || | Sbjct 104869 CGCCATTA-CCGTTACAACCATGGTAGGCGCAGAACCTACCATCGACAACTGATAAGGAA 104811 Query 215 GAAATTTGAATGAACCATCGCC--GGCTCAAGGCC-ATGCG--------ATTCGT----- 258 | ||||||| || | ||||| ||| ||| || |||| || || Sbjct 104810 AACATTTGAAAGATGCGTCGCCAATGCT-AAGACCGCTGCGGCAACAAAGTTAGTCAGCA 104752 Query 259 -TAAGTTATTATGAATCACCAA--------------GGAGCCCCGAAG--GGCGTTGGTT 301 |||||||| || ||| ||| ||| || | || | | | Sbjct 104751 CAAAGTTATTCAGAGTCATCAAAATAAACGATGGATAGAGACCGCTCGCCACCGATTGGT 104692 Query 302 TTTTATCTAATAAATACACCCCT----TCCGAAGTCGGG---GTTTTTAGCATGTATTAG 354 ||| || ||||||| | |||| || |||| | | ||| ||||| |||| Sbjct 104691 TTTGATTTAATAAAAGCGTCCCTCTCATCACTGGTCGAGATACTGTTTTGCATGCATTAA 104632 Query 355 CTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGATAACTG 411 || ||||||| || |||||||| || || ||||| ||| ||| ||| ||||||| Sbjct 104631 CTTTAGAATT---ACAGTTATCCAAATAAATGT-GGGTACAATCTAATGAACCATAACTG 104576 Query 412 ---ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||| |||||||| |||||| || | | || | ||| |||| || Sbjct 104575 ATAATTTAATGAACCATTCGCGATTTCACCTTA-ATTTAGCATGCACTAAGAC---TAT- 104521 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||||||||||| |||||| ||||||||| Sbjct 104520 ACTTAATATTTGAGACAAGTATATGATTACTGGCAG 104485 Score = 129 bits (142), Expect = 2e-27 Identities = 261/389 (67%), Gaps = 60/389 (15%) Strand=Plus/Plus Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 ||||||||||||||||| |||||||||||| | ||||||||||| ||| |||| | Sbjct 166832 ATTCCCCGTTACCCGTTACAACCATGGTAGGCGCAGAACCTACCATCGACAGTCGATAAG 166891 Query 212 GCAGAAATTTGAATGAACCATCGCCGGC--TCAAGGCCATGCGATTCG--TTAAGTTATT 267 ||||| ||||||| | | ||| || | || || |||||| | | |||||||| Sbjct 166892 GCAGACATTTGAAAAATGCGTCGTGGGTGTTAAAAACCCTGCGATAAGCATAAAGTTATT 166951 Query 268 ATGAATCACCAA---GGAGCCCCGA---AGGGCGTTGGT----------TTTTTATCTAA 311 || |||| || || | | || || || | | |||| |||||| Sbjct 166952 CAGAGTCACTAAAACGGTGGACGGACAGAGACCGCTCGCCACCGATTAATTTTGATCTAA 167011 Query 312 TAAATACACCCCT-----------TCCGA--AGTCGGGGTTTTTAGCATGTATTAGCTCT 358 |||| |||| || | |||| | ||| ||||||||||||||| Sbjct 167012 TAAAAGTGTCCCTCTCATCACTGGTCGGCTCAGTCACTCTGTTTTGCATGTATTAGCTCT 167071 Query 359 AGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| |||||||| | | || ||| | ||| |||||||||| Sbjct 167072 AGAATTACCACAGTTATCCAAGAAAATGTG-GGTGCAATC----------TAACTGATTT 167120 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||| ||||| || |||||| || ||| |||||||||||||||||| Sbjct 167121 AATGAACCATTTGCGGTTTCA-------------TTCGACTGAGACATGCATGGCTTAAT 167167 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| ||||||||||||| ||| Sbjct 167168 CTTTGAGACAAACATATGACTACTGACAG 167196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510329841920