Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4254 98.7 8e-16 >seq4254 Length=3256360 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 61442 ATTGGGCCTTCAATTGGATCAC-CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 |||||||||| || ||||||| || | | | | |||||| |||||| | | || Sbjct 698547 ATTGGGCCTTAAACTGGATCAATCACGAGAGTGCC-ACATTTCCTGAACGTATAGTTGCT 698489 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT-GCCGCAATCTTTTGGTTGAA 61559 ||||| | ||| || ||| | ||||| || || | |||| || || || ||||||||||| Sbjct 698488 TTTGCAGCGGTTGAAGGTATTTTTTTTAGCGG-TAGTTTCGCTGCGATATTTTGGTTGAA 698430 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 |||||| ||| | ||||| || || || ||||||||||| | || ||||| || || Sbjct 698429 GAAACGAGGAATCATGCCTGGCCTTACTTTCAGCAATGAACTCATCTCACGAGATGA 698373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| ||||| || || || ||||| || ||||| || ||||| |||||| | || | Sbjct 698953 CATGTCTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAATGAAAATTTAATTGAGAGA 698894 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || |||||||| || | | || || || ||||| || || ||||| || ||||| Sbjct 698893 TTTAGTCAGGAGGTAAAAATTGCCGAAGCACGCTGTTTTTATGGTTTCCAAATCGCCATA 698834 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||| | || ||||||||||| | | || ||||| || || || Sbjct 698833 GAGAATATTCATTCGGAGATGTATTCTTTACTAATCGAAACTTATAT 698787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545493302800