Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Proctacanthus_20coquilletti_20[genbank_20GCA_5F001932985.1_202017- 01-04] 14,695 sequences; 208,907,727 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1418 255 9e-66 seq3330 136 6e-30 seq521 105 1e-20 seq8897 77.0 5e-12 >seq1418 Length=2559 Score = 255 bits (282), Expect = 9e-66 Identities = 199/232 (86%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| ||||||| | |||||||||||||| | Sbjct 2203 GTACAAAGGGCAGGGACGTAATCAGCACAAGCT-GATGACTTGTGCTTACTAGGAATT-C 2260 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||||||||| || ||||||||| |||||||||||||||||| | || ||||| Sbjct 2261 CTCGTTGAAGACGAATAATTGCAATCGTCTATCCCCATCACGATGCGTACTAAAGAGATT 2320 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || |||| |||| ||| |||||||||| |||||||||||||||||||| Sbjct 2321 ACCCAACCCCATCGGGTAAGGA-ATAAACTCGTTGAACGCATCAGTGTAGCGCGCGTGCA 2379 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2380 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 2431 >seq3330 Length=1456 Score = 136 bits (150), Expect = 6e-30 Identities = 175/229 (76%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| |||| || |||| |||| |||||| |||||| | Sbjct 641 GTACAAAGGGCAGGGACGTAATCAATGCGAA-TTAATGATTCGCACTTACTGGGAATT-C 698 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 699 CAGGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGATTCAGCGGT 755 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||| ||||| |||| | ||| ||| || ||||| ||| | || | |||||||||| Sbjct 756 TTACCCAGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTTTAGCGCGCGT 812 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||| ||||||||||||||| ||||| || Sbjct 813 GCAGCCCAGGACATCTAAGGGCATTACAGACCTGTTATTG-CTCAATCT 860 >seq521 Length=12490 Score = 105 bits (116), Expect = 1e-20 Identities = 158/213 (74%), Gaps = 16/213 (8%) Strand=Plus/Minus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 ||||||||||||| |||| |||| || |||| |||| |||||| |||||| || ||| Sbjct 10666 GGGCAGGGACGTAATCAATGCGAA-TTAATGATTCGCACTTACTGGGAATT-CCAGGTTC 10609 Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT-ACCCG 124 | | | |||| || || | | ||||| | || || || | |||| | || |||| Sbjct 10608 ATG-CGAACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGATTCAGCGGTTTACCCA 10552 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGCCC 183 ||||| || ||| ||| || ||||| ||| | || |||| ||||||||| |||| Sbjct 10551 GACCTCTCT----AGGAAATACAC--GTTGA-TACTTTCATTGTAACGCGCGTGCAGCCC 10499 Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTG 216 || |||||||||| ||| ||||||||||||||| Sbjct 10498 AGGACATCTAAGGACATTACAGACCTGTTATTG 10466 >seq8897 Length=914 Score = 77.0 bits (84), Expect = 5e-12 Identities = 131/179 (73%), Gaps = 12/179 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| |||| || |||| |||| |||||| |||| ||| Sbjct 744 GTACAAAGGGCAGGGACGTAATCAATGCGA-ATTAATGATTCGCACTTACTGGGAA-TTC 801 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCA-AAGA 117 | ||| | | |||| || || | | ||||| | || || || | |||| | Sbjct 802 CAGGTTCATG-TGAACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGATTCAGCGGT 858 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATAC-ATCAGTGTAGCGCGCG 175 |||||| ||||| |||| | || || | || ||||| |||| ||| ||||||||||| Sbjct 859 TTACCCAGACCTCTCGGTCTAG--GAAATACACGTTG-ATACTTTCATTGTAGCGCGCG 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751892946925