Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11988 167 4e-39 >seq11988 Length=5545 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||| ||| |||||||| Sbjct 5323 CTAGTTAGCAGGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCGCTCCACCA 5382 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 5383 ACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTC 5439 Score = 104 bits (114), Expect = 4e-20 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4960 TACACGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5019 Query 61 ACCTGTTATTGC 72 ||||||||| || Sbjct 5020 ACCTGTTATCGC 5031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796283930817