Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11988 280 5e-73 seq58480 248 3e-63 seq1377 163 9e-38 seq16516 86.0 2e-14 >seq11988 Length=5545 Score = 280 bits (310), Expect = 5e-73 Identities = 167/175 (95%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGTAGATAGGGACAGAGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 60 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || Sbjct 61 GAGGCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTGCTT 120 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 121 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 175 >seq58480 Length=22108 Score = 248 bits (274), Expect = 3e-63 Identities = 158/172 (92%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15164 AGATAGGGACAGAGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 15223 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| || || Sbjct 15224 GCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGCTTACCCGCGCTTGCTTAAA 15283 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| ||| |||| ||||||||| ||||||||||||| | | ||||| Sbjct 15284 TTTCTTCACGTTGGCATTTAGAGCACTGAGCAGAAATCACATCGTGGCAACA 15335 >seq1377 Length=879 Score = 163 bits (180), Expect = 9e-38 Identities = 121/140 (86%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCT-CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 || ||||||||||| ||||||| | || ||| |||| | | |||| ||||||||| Sbjct 140 CGTCTCCCACTTATGCTACACCCCGGCATGTCTCCGAACAATGCCAGACTGGAGTCAAGC 81 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 80 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 21 Query 353 CTAGATAGTAGATAGGGACA 372 ||||| |||||||||||||| Sbjct 20 CTAGAAAGTAGATAGGGACA 1 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| |||||||||||||||||||| Sbjct 607 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 548 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| ||||||||||||||| | |||| || Sbjct 547 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCGGTGTCCTC 498 >seq16516 Length=8088 Score = 86.0 bits (94), Expect = 2e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 7 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAAAGTAGATAGGGACAATG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634106754336