Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq47140 111 1e-19 seq24804 102 6e-17 >seq47140 Length=38879 Score = 111 bits (122), Expect = 1e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 |||||| || || |||||||| || || || || || |||||||| |||||||||||| Sbjct 14237 TTCATTTCGCACGTATTGGCGTTTTTCGCAGCGTCCGATGGTATCGTTAATGAGAATTTA 14296 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 | ||||||||| || ||||| ||| | | || || || | |||||||| || || Sbjct 14297 GTCGAACGTTTCTTTCAAGAGGTACAAATTCCTGAAGCCCGATTCTTCTACGGATTTCAA 14356 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTAC 61368 || | || || ||||| || ||||| |||||||| | | |||||||| ||| Sbjct 14357 ATCACTATTGAAAATGTACATTCGGAAATGTACAGCTTATTGATCGATACTTAC 14410 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || ||| ||||||| || || | ||||||||| |||||| |||| || ||| | || || Sbjct 14870 GAAATTATTCGTGACGCTGTTATTATCGAACAAGAATTTTTGACCGATGCTCTTCCAGTA 14929 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 || | || || ||||| ||| | ||||| | |||||||||||||| ||||| | Sbjct 14930 TCGATGATTGGAATGAACAGTGAATTAATGAAGACCTATATTGAATTTGTAGCCGATAGA 14989 Query 61813 CTGTTGGTCGATTTGGGT 61830 | |||||||| ||| || Sbjct 14990 TTATTGGTCGAATTGAGT 15007 >seq24804 Length=9356 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || ||||| || || || || || || || ||| ||||||| |||||||| | || Sbjct 6779 TTATTCAACGCTATTGAAACCATGCCTTGTGTCAAGAGGAAAGCAGATTGGGCTCTGAAA 6838 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| | | || || || ||||| ||| || | | || ||||| | ||||| Sbjct 6839 TGGATTGCTGATCAAAACGCCACTTTTGGAGAAAGAATCATAGCGTTTGCAGCTGTCGAA 6898 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 ||| | || || |||| ||||||||||| |||||| | || || || || || ||| Sbjct 6899 GGTATCTTCTTTTCTGGAAGTTTTGCCGCAATATTTTGGCTCAAAAAGCGAGGCCTAATG 6958 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 || || |||| ||||| ||||| |||||||| | ||||| Sbjct 6959 CCTGGATTGACTTTCAGTAATGAACTGATATCAAGAGACGA 6999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397244053766480