Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1389 168 1e-39 seq905 165 1e-38 seq885 165 1e-38 seq3753 163 5e-38 seq2106 161 2e-37 seq1867 161 2e-37 seq880 158 2e-36 seq901 149 1e-33 seq2738 78.8 2e-12 >seq1389 Length=39678 Score = 168 bits (186), Expect = 1e-39 Identities = 198/260 (76%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATA 121 ||| | || ||||||||||| ||||||||||| | ||||||||| ||| ||| ||||| Sbjct 30372 GCCGGTACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAGCTTCGCT-GAATA 30430 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--C 178 | | |||||||||||| ||||||||| | | | ||||||||| |||||| | ||| | Sbjct 30431 CTGTGTGCATGGAATAATGGAATAGGACCT-CAGGTCTATTTTGGTGGTTT-TCGGAACC 30488 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||||||||| || ||||| | ||||| || ||| ||||||| Sbjct 30489 CGAGGTAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAAGTGAAAT 30548 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||||||| ||||| || || ||||| || |||| |||||||||||| | Sbjct 30549 TCTTGGATTGTCGCAAGACGGACAGAAGCNAAAGCATTTGCCAAAAATGTTTTCATTACT 30608 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||||| || Sbjct 30609 CA-AGAACGAAAGTTAGAGG 30627 >seq905 Length=44647 Score = 165 bits (182), Expect = 1e-38 Identities = 192/252 (76%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTA- 126 || ||||||| ||| |||||||||| | ||||||||| ||| || |||||| | Sbjct 18479 ACGTTTACTT-GAACTAATTAGAGTGCTTAAAGCAGGCTAGCTTNGCCTGAATACTGTGT 18421 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG--- 183 |||||||||||| ||||||||| | |||||||||||||||||||| | ||| | ||| Sbjct 18420 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 18363 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||||||||||| || || ||||| | ||||| || |||||||||||||||| Sbjct 18362 TAATGATTAATAGNGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 18303 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||| || |||||||| || | || |||||||||||||||| | Sbjct 18302 GATCGTCGCAAGACGGACAGAAGCGAAAGCATTTGCAAAAAATGTTTTCATTAATCA-AG 18244 Query 304 AACGAAAGTTAG 315 |||||||||||| Sbjct 18243 AACGAAAGTTAG 18232 >seq885 Length=44800 Score = 165 bits (182), Expect = 1e-38 Identities = 197/261 (75%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATA 121 ||| | || ||||||||||| ||||||||||| | ||||||||| |||||| ||||| Sbjct 38111 GCCGGTACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAGCTTTGCCTGAATA 38052 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | | ||||||||||| ||||||||| | |||||||||||||||||||| | ||| | Sbjct 38051 CTGTGTGCATGGAATAACAGAATAGGATCT-CGGTTCTATTTTGTTGGTTT-TCGGAACC 37994 Query 181 CCG---TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||| ||||||||| |||||| || || || | ||||| || |||||| ||| Sbjct 37993 CCGAAATAATGATTACTAGGGACAGATGGAGGCATTCGTATTGCGACGTTAGAGGTAAAA 37934 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 || ||||||| ||||| || || ||||| || |||| ||||||||||||| Sbjct 37933 TTTTTGGATTGTCGCAAGACGGACAGAAGCAAAAGCATTTGCCAAAAATGTTTTCATTAA 37874 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| |||| |||||||| || Sbjct 37873 TCA-AGAACNAAAGTTAGAGG 37854 >seq3753 Length=7174 Score = 163 bits (180), Expect = 5e-38 Identities = 197/259 (76%), Gaps = 12/259 (5%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATA 121 ||| | || ||||||||||| ||||||||||| ||||||||| ||| ||| ||||| Sbjct 1972 GCCGGTACGTTTACTTTGAACAAATTAGAGTGCGTAAAGCAGGCTAGCTTCGCTTGAATA 1913 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | | ||||| |||||| ||||| ||| | ||||||||||||||||||| | ||| | Sbjct 1912 CTGTGTGCATGAAATAATGGAATAAGACTTT-GGTTCTATTTTGTTGGTTT-TGGGAACC 1855 Query 181 CCGTA---ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||| |||||||||||||| || ||| | ||||| || |||||||||| Sbjct 1854 CCGTAGTAATGATTAATAGGGACAGATAAGGGCATTCGTATTGCGACGTTAGAGGTGAAA 1795 Query 238 TTCTTGGATT-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 |||||||||| | |||| ||| || || ||||| || |||| |||||||||||| Sbjct 1794 TTCTTGGATTGTCTTGA-GACGGACAGAAGCAAAAGCATTTGCCAAAAATGTTTTCATTA 1736 Query 297 ATCAGTGAACGAAAGTTAG 315 |||| |||| |||||||| Sbjct 1735 ATCA-AGAACAAAAGTTAG 1718 >seq2106 Length=19525 Score = 161 bits (178), Expect = 2e-37 Identities = 195/260 (75%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATA 121 ||| | || ||||||||||| |||||||| || ||||||||| ||| || ||||| Sbjct 8503 GCCGGTACGTTTACTTTGAACAAATTAGAATGCGTAAAGCAGGCTAGCTTCGCCTGAATA 8562 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-- 178 | | ||||| |||||||||||||||| | |||||||||||||||||||| | | || Sbjct 8563 CTGTGTGCATGAAATAATAGAATAGGACAT-CGGTTCTATTTTGTTGGTTTTTGGAACTT 8621 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || |||||||||||| || || ||||| | ||||| || ||||||||||| Sbjct 8622 CGAAATAATGATTAATAAAGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAAT 8681 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||||||| ||||| || |||||||| || |||| ||||||||| |||| Sbjct 8682 TCTTGGATCGTCGCAAGACGGACAGAAGCGAAAGCATTTGCCAAAAATGTTTTCAGTAAT 8741 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||||| || Sbjct 8742 CA-AGAACGAAAGTTAGAGG 8760 >seq1867 Length=22164 Score = 161 bits (178), Expect = 2e-37 Identities = 210/285 (74%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||| | || ||||||||||| ||||||||||||| Sbjct 15194 TGCTCTTTACTGAGTGTCGAGTCGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGTTT 15135 Query 100 AAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||| |||| ||| | ||||| | |||||||||||| ||||||||| | |||| Sbjct 15134 AAAACAGGTTAGCTTCGTCTGAATATTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 15076 Query 156 TCTATTTTGTTGGTTTCTAGGA--CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | ||| |||||||||||||||| || ||||| | Sbjct 15075 TCTATTTTGTTGGTTTCCGAAAACCCGAGGTAATGATTAATAGGGGCAGATGGGGGCATT 15016 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || |||||| |||||||||||| ||||| || || ||||| Sbjct 15015 CGTATTGCGACGTTAGAGGTAAAATTCTTGGATCGTCGCAAGACGGACAGAAGCAAAAGC 14956 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| |||||||||||||||| ||||||||||||| || Sbjct 14955 ATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 14912 >seq880 Length=49736 Score = 158 bits (174), Expect = 2e-36 Identities = 193/253 (76%), Gaps = 13/253 (5%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTA- 126 || ||||||||||| |||||||||| ||||||||| ||| ||| ||||| || Sbjct 42958 ACGTTTACTTTGAACGAATTAGAGTGCGTAAAGCAGGCTAGCTTCGCTTAAATACTGTAT 42899 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA---CCGCCG 183 ||||| ||||||| |||||||| | |||||||||||||||||||| | ||| ||| | Sbjct 42898 GCATGAAATAATAAAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TGGGAACCCCGTAG 42841 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||| ||| || |||| || ||||| || |||||| ||||||||| Sbjct 42840 TAATGATTAATAAGGACAGATAGGGGCATC-GTATTGCGACGTTAGAGGTAAAATTCTTG 42782 Query 244 GATT-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| | ||||| || || || ||||| || |||| |||||||||||||||| Sbjct 42781 GATTGTCTTGAA-ACGGACAGAAGCAAAAGCATTTGCCAAAAATGTTTTCATTAATCA-A 42724 Query 303 GAACGAAAGTTAG 315 |||| ||| |||| Sbjct 42723 GAACAAAAATTAG 42711 >seq901 Length=49467 Score = 149 bits (164), Expect = 1e-33 Identities = 197/264 (75%), Gaps = 16/264 (6%) Strand=Plus/Plus Query 63 GAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAA 119 ||||| | || ||||||||||| |||||||||| ||||||||| ||| ||| ||| Sbjct 26980 GAGCCGGTACGTTTACTTTGAACGAATTAGAGTGCGTAAAGCAGGCTAGCTTCGCTTGAA 27039 Query 120 TAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177 ||| | ||| |||||| ||||||||| | ||||||||||||||||||| | ||| Sbjct 27040 TACTGTGTGCAGAAAATAATGGAATAGGAC-TTTGGTTCTATTTTGTTGGTTT-TGGGAA 27097 Query 178 --CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 ||| ||||||||||||||| | || |||| | ||||| || |||||||| Sbjct 27098 CCCCGAAGTAATGATTAATAGGAACAGATAGGGGCATTTGTATTGCGACGTTAGAGGTGA 27157 Query 236 AATTCTTGGATT-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||| ||||||| | ||| |||| | || ||||| || |||| |||||||||| Sbjct 27158 AATTTTTGGATTGTCTTG-AGACGGA----AGCAAAAGCATTTGCCAAAAATGTTTTCAT 27212 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||| |||||||| || Sbjct 27213 TAATCA-AGAACAAAAGTTAGAGG 27235 >seq2738 Length=13236 Score = 78.8 bits (86), Expect = 2e-12 Identities = 82/106 (77%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||||| || ||||||||||| ||||||||||| | Sbjct 10730 TGCTCTTTACTGAGTGTCGAGTCGGGCCAGTACGTTTACTTTGAACAAATTAGAGTGCTT 10671 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGA 141 ||||||||| ||| ||| |||||| | |||||||||||| || Sbjct 10670 AAAGCAGGCTAGCTTCGCTTGAATACTGTGTGCATGGAATAATGGA 10625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915139999488