Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq885 214 3e-53 seq1867 203 5e-50 seq901 179 6e-43 seq2106 178 2e-42 seq1389 176 7e-42 seq880 159 6e-37 seq3753 156 7e-36 seq3527 105 1e-20 >seq885 Length=44800 Score = 214 bits (236), Expect = 3e-53 Identities = 221/293 (75%), Gaps = 49/293 (17%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 37319 TCCTTCAGTGTAGCGCGCGTGCNGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 37378 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------- 115 | |||| || | |||| |||||| |||||||||||||| Sbjct 37379 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTAGTTTGTACGTTG 37436 Query 116 --------------CCAGCC---ACC---AACCATAGTCGAT-------GG---GGCTAT 145 || ||| ||| | || | | |||| || | |||| Sbjct 37437 GTAGTAAACACCCGCCGGCCGAAACCGGGAGCCTTCG-CGATACCATAAGGTACGCCTAT 37495 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 37496 TTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTA 37555 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 37556 AGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 37608 >seq1867 Length=22164 Score = 203 bits (224), Expect = 5e-50 Identities = 217/294 (74%), Gaps = 51/294 (17%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14383 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 14442 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------- 115 | |||| || | |||| |||||| |||||||||||||| Sbjct 14443 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTAGTTTGTACGTTG 14500 Query 116 --------------CCAGCC---ACCA--------------ACCATAGTCGATGGGGCTA 144 || ||| ||| |||||| ||| | ||| Sbjct 14501 GTAGTAAAAACCCGCCGGCCGAAACCGGGGGCTTTCGCGATACCATAA--GATACGCCTA 14558 Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 14559 TTTAGCAGGCGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATNGCTCCACCAACT 14618 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 14619 AAGAACGGCCATGCACCATCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 14672 >seq901 Length=49467 Score = 179 bits (198), Expect = 6e-43 Identities = 212/289 (73%), Gaps = 51/289 (18%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 27758 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACTTGTTATTGC-TC 27700 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-------------------- 115 || ||| |||| |||||| |||||||||||||| Sbjct 27699 AATCTTGTGC-GGCTAGAAGCCGCCTGTCCCTCTAAGAAGAATAGTTTGTACGTTGGTAG 27641 Query 116 ------CCAGCCACC---AACCAT-AGTC-----GAT-------GG----GGCTATTTAG 149 || ||| | |||| |||| ||| || | |||||||| Sbjct 27640 TAAAAACCCGCCGGCCGAAACCGGGAGTCTTTGCGATACCATAAGGTATCGCCTATTTAG 27581 Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 |||| ||| |||||||| ||||| ||||||||||||||||||| |||||||| |||| Sbjct 27580 CAGGCTAAAGTCTCGTTTGTTATTGGAATTAACCAGACAAATCGTTCCACCAA---AGAA 27524 Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 27523 CGGCCATGCACCACCACTCACCGAATCAAGAAAGAGCTATCAATCTGTC 27475 >seq2106 Length=19525 Score = 178 bits (196), Expect = 2e-42 Identities = 212/292 (73%), Gaps = 47/292 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9295 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 9236 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------- 115 | |||| || | |||| |||||| |||||||||||||| Sbjct 9235 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTAGTTTGTACGTTG 9178 Query 116 ----------CCAGCCACC---AACCATAG----TCG---------ATGG---GGCTATT 146 || ||| | |||| | ||| | || | ||||| Sbjct 9177 GTAGTAAAAACCTGCCGGCCGAAACCGGGGGCCTTCGCACTACCATAAGGTACGCCTATT 9118 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 |||||| || |||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 9117 TAGCAGACTAGAGTCTTGTTCGTTATCGGAATTAACCAGACAAATCGCTCCANCAACTAA 9058 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||| |||||| ||| | ||||||||||||| Sbjct 9057 GAACGGCCATGCACCACCATCCACCAAATCAAAAAAAATCTATCAATCTGTC 9006 >seq1389 Length=39678 Score = 176 bits (194), Expect = 7e-42 Identities = 211/294 (72%), Gaps = 51/294 (17%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 31162 TCCTTCAGTGTAGCGCGCGTGCGGCTCAGAACATCTAAGGGCATCATAGACCTGTTATTG 31103 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------- 115 | |||| || | |||| |||||| |||||||||||||| Sbjct 31102 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTAATTTGTACGTTG 31045 Query 116 --------------CCAGCC---ACCA--------------ACCATAGTCGATGGGGCTA 144 || ||| ||| |||||| ||| | ||| Sbjct 31044 GTAGTAAAAACCCGCCGGCCGAAACCGGGGGCTTTCGCGATACCATAA--GATACGCCTA 30987 Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 | ||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 30986 TATAGCAGGCTAGAGTCTCATTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACT 30927 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||| || |||||| || ||||||||||||||||||||||| Sbjct 30926 AAAAACGGCCATGCATCATCACCCACCAAAACAAGAAAGAGCTATCAATCTGTC 30873 >seq880 Length=49736 Score = 159 bits (176), Expect = 6e-37 Identities = 106/117 (91%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||| Sbjct 41706 CTATTTAGCAGGCTAAAGTCTCGTTCGTTATTGGAATTAACCAGACAAATCGCTCCACCA 41765 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| |||||| || ||||||||||||||||||||||||||| Sbjct 41766 ---AAGAACGGCCATGCATCACCACTCACCGAATCAAGAAAGAGCTATCAATCTGTC 41819 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| | ||||||||||||||| | |||| |||||| ||| |||| |||| |||||||| Sbjct 41536 TCCTTTAGTGTAGCGCGCGTGTGACCCAAAACATCAAAGAGCATTGCAGATATGTTATTG 41595 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| |||||||||||||| Sbjct 41596 -CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAG 41637 >seq3753 Length=7174 Score = 156 bits (172), Expect = 7e-36 Identities = 105/117 (90%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| || Sbjct 1362 CTATTTAGCAGGCTAAAGTCTCGTTCGTTATTGGAATTAACCAGACAAATCGCTCCATCA 1421 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 1422 ---AAGAACGGCCATGCACCACCACTCACCGAATCAAGAAAAAGCTATCAATCTGTC 1475 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||| |||| |||||| ||| |||| |||| |||||||| Sbjct 1191 TCCTTCAGTGTAGCGCGCGTGCGACCCAAAACATCAAAGAGCATTGCAGATTTGTTATTG 1250 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||||| | || |||| |||||| |||||||||| Sbjct 1251 -CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 1288 >seq3527 Length=12440 Score = 105 bits (116), Expect = 1e-20 Identities = 85/100 (85%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 973 TCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATTACAGACCTGTTATTG-CTC 915 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || | || |||| |||||| |||||||||| ||| Sbjct 914 AATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAAAAG 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796749394236