Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1867 93.3 3e-17 seq2321 91.5 9e-17 seq2106 78.8 6e-13 seq1389 78.8 6e-13 seq885 73.4 2e-11 >seq1867 Length=22164 Score = 93.3 bits (102), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | ||| ||||| ||||| || |||||||| ||||||||||| |||||||||| Sbjct 14182 TCCGAA-GATCTTACTAAATCATTTAAT-CGGTAGTA-GCGACGGGCGGNGTGTACAAAG 14238 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 14239 GGCAGGGACGTAAT-CAACGCGAGCT 14263 >seq2321 Length=22588 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 19244 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 19300 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 19301 GGCAGGGACGTAAT-CAACGCGAGCT 19325 >seq2106 Length=19525 Score = 78.8 bits (86), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | || ||||| |||| ||| ||||||| ||||||||||| |||||||||| Sbjct 9496 TCCGAA-GACCTTACTAAATCATTCAATT-GGTAGTA-GCGACGGGCGGTGTGTACAAAG 9440 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| || ||| |||| Sbjct 9439 GGCAGGGACGTAAT-CACCGCGAGCT 9415 >seq1389 Length=39678 Score = 78.8 bits (86), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 43 AAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCA 102 |||| || ||||| ||||| ||| ||||||| ||||||||||| |||||||||||||| Sbjct 31360 AAAGACCTTACTAAATCATTTAATT-GGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCA 31303 Query 103 GGGACGTAATACAACGCAAGCT 124 | |||||||| |||| | |||| Sbjct 31302 GAGACGTAAT-CAACCCGAGCT 31282 >seq885 Length=44800 Score = 73.4 bits (80), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | || ||||| |||| || ||||||||| |||||| |||| |||||||||| Sbjct 37118 TCCGAA-GACCTTACTAAATCATT-CAATCGGTAGTA-GCGACGAGCGGTGTGTACAAAG 37174 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 37175 GGCAGGGACGTAAT 37188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300781512080