Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq905 105 7e-21 seq880 105 7e-21 seq1389 104 2e-20 seq885 104 2e-20 seq2106 102 8e-20 seq3753 100 3e-19 seq1867 95.1 1e-17 seq901 87.8 2e-15 >seq905 Length=44647 Score = 105 bits (116), Expect = 7e-21 Identities = 137/183 (75%), Gaps = 9/183 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||||||| ||| |||||||| | | ||||||||| ||| || |||||| | Sbjct 18479 ACGTTTACTT-GAACTAATTAGAGTGCTTAAAGCAGGCTAGCTTNGCCTGAATACTGTGT 18421 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--G 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 18420 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 18363 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| || || ||||| | ||||| || | |||||||||||||| Sbjct 18362 TAATGATTAATAGNGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 18303 Query 184 GAT 186 ||| Sbjct 18302 GAT 18300 >seq880 Length=49736 Score = 105 bits (116), Expect = 7e-21 Identities = 138/184 (75%), Gaps = 9/184 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTA- 65 || ||||||||||| |||||||| | ||||||||| ||| ||| ||||| || Sbjct 42958 ACGTTTACTTTGAACGAATTAGAGTGCGTAAAGCAGGCTAGCTTCGCTTAAATACTGTAT 42899 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 |||| ||||||| |||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 42898 GCATGAAATAATAAAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TGGGAACCCCGTAG 42841 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || |||| || ||||| || | |||| ||||||||| Sbjct 42840 TAATGATTAATAAGGACAGATAGGGGCATC-GTATTGCGACGTTAGAGGTAAAATTCTTG 42782 Query 184 GATT 187 |||| Sbjct 42781 GATT 42778 >seq1389 Length=39678 Score = 104 bits (114), Expect = 2e-20 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | ||||||||| ||| ||| |||||| | Sbjct 30378 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAGCTTCGCT-GAATACTGTGT 30436 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | | | ||||||||| ||||| | ||| ||| Sbjct 30437 GCATGGAATAATGGAATAGGACCT-CAGGTCTATTTTGGTGGTTTTCGGAACCCGAGGTA 30495 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||| || ||||| | ||||| || | | |||||||||||||| Sbjct 30496 ATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAAGTGAAATTCTTGGA 30555 Query 186 TT 187 || Sbjct 30556 TT 30557 >seq885 Length=44800 Score = 104 bits (114), Expect = 2e-20 Identities = 138/185 (75%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | ||||||||| |||||| |||||| | Sbjct 38105 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAGCTTTGCCTGAATACTGTGT 38046 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-- 123 |||||||||| ||||||||| | |||||||||||||| ||||| | ||| | |||| Sbjct 38045 GCATGGAATAACAGAATAGGATCT-CGGTTCTATTTTGTTGGTTT-TCGGAAC-CCCGAA 37989 Query 124 -TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 ||||||| | || ||| || || || | ||||| || | |||| ||||| || Sbjct 37988 ATAATGATTACTAGGGACAGATGGAGGCATTCGTATTGCGACGTTAGAGGTAAAATTTTT 37929 Query 183 GGATT 187 ||||| Sbjct 37928 GGATT 37924 >seq2106 Length=19525 Score = 102 bits (112), Expect = 8e-20 Identities = 137/184 (74%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGA--GCGTTCAAAGCAGGC---CTTTGCTCGAATAC-AT 63 || ||||||||||| |||||||| |||| ||||||||| ||| || |||||| | Sbjct 8509 ACGTTTACTTTGAACAAATTAGAATGCGT--AAAGCAGGCTAGCTTCGCCTGAATACTGT 8566 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CC 122 |||| |||||||||||||||| | |||||||||||||| ||||| | | || | Sbjct 8567 GTGCATGAAATAATAGAATAGGACAT-CGGTTCTATTTTGTTGGTTTTTGGAACTTCGAA 8625 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 ||||||| |||| || || ||||| | ||||| || | ||||||||||||| Sbjct 8626 ATAATGATTAATAAAGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 8685 Query 183 GGAT 186 |||| Sbjct 8686 GGAT 8689 >seq3753 Length=7174 Score = 100 bits (110), Expect = 3e-19 Identities = 136/184 (74%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | ||||||||| ||| ||| |||||| | Sbjct 1966 ACGTTTACTTTGAACAAATTAGAGTGCGTAAAGCAGGCTAGCTTCGCTTGAATACTGTGT 1907 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 |||| |||||| ||||| ||| | ||||||||||||| ||||| | ||| | || | Sbjct 1906 GCATGAAATAATGGAATAAGAC-TTTGGTTCTATTTTGTTGGTTT-TGGGAACCCCGTAG 1849 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||| | ||||| || | |||||||||||||| Sbjct 1848 TAATGATTAATAGGGACAGATAAGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 1789 Query 184 GATT 187 |||| Sbjct 1788 GATT 1785 >seq1867 Length=22164 Score = 95.1 bits (104), Expect = 1e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG---CCTTTGCTCGAATA-CATTA 65 || ||||||||||| ||||||||| ||| ||| |||| ||| | ||||| | Sbjct 15163 ACGTTTACTTTGAACAAATTAGAGTGTTTAAAACAGGTTAGCTTCGTCTGAATATTGTGT 15104 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT-CTAGGACCGCCCGT 124 ||||||||||| ||||||||| | |||||||||||||| ||||| | | ||| || Sbjct 15103 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTCCGAAAACCCGAGGT 15045 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| || || ||||| | ||||| || | |||| |||||||||| Sbjct 15044 AATGATTAATAGGGGCAGATGGGGGCATTCGTATTGCGACGTTAGAGGTAAAATTCTTGG 14985 Query 185 AT 186 || Sbjct 14984 AT 14983 >seq901 Length=49467 Score = 87.8 bits (96), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAA 58 || || | || ||||||||||| |||||||| | ||||||||| ||| ||| ||| Sbjct 26980 GAGCCGGTACGTTTACTTTGAACGAATTAGAGTGCGTAAAGCAGGCTAGCTTCGCTTGAA 27039 Query 59 TAC-ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 ||| | || |||||| ||||||||| | ||||||||||||| ||||| | ||| Sbjct 27040 TACTGTGTGCAGAAAATAATGGAATAGGAC-TTTGGTTCTATTTTGTTGGTTT-TGGGAA 27097 Query 118 CGCC--CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175 | || |||||||| |||| | | || |||| | ||||| || | |||||| Sbjct 27098 CCCCGAAGTAATGATTAATAGGAACAGATAGGGGCATTTGTATTGCGACGTTAGAGGTGA 27157 Query 176 AATTCTTGGATT 187 |||| ||||||| Sbjct 27158 AATTTTTGGATT 27169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511967482240