Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq885 219 8e-55 seq1867 215 1e-53 seq2106 210 4e-52 seq1389 168 1e-39 seq880 138 2e-30 seq3753 134 3e-29 seq901 116 7e-24 seq3527 107 4e-21 seq2321 84.2 4e-14 >seq885 Length=44800 Score = 219 bits (242), Expect = 8e-55 Identities = 208/259 (80%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 37420 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 37363 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||| |||||||||||||||||| || || || || Sbjct 37362 ATGCCCTTAGATGTTCTGGGCNGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 37306 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG-AGCATT 249 || || ||| |||| |||||| | | || |||| ||||||| ||||| | ||| || Sbjct 37305 CCCTGACCGAAAGGCTCGGGTAACCCGCTGAACCTCTTTCGTGCTAGGGATTGGAGC-TT 37247 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| || ||| | |||||||||| || |||||||||| ||||| ||| |||| |||| Sbjct 37246 GCAATTGTTTCTCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCCCGCGGTGAT 37187 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 37186 TACGTCCCTGCCCTTTGTA 37168 >seq1867 Length=22164 Score = 215 bits (238), Expect = 1e-53 Identities = 205/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 14484 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 14427 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 14426 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 14370 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || ||| |||| | | |||| || | || ||| ||||||| |||| | | ||| Sbjct 14369 CCCTGACCGAAAGGCCCGAGTAACCTGCTGAACCTCCTTCGTGCTANGGATTGGGGCTTG 14310 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| || || ||| |||||||||| Sbjct 14309 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTTATAAGCTCGCGTTGATT 14250 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 14249 ACGTCCCTGCCCTTTGTA 14232 >seq2106 Length=19525 Score = 210 bits (232), Expect = 4e-52 Identities = 204/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 9194 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 9251 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 9252 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 9308 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || ||| || | | |||||| | | || ||| |||||| ||||| | | ||| Sbjct 9309 CCCTGACCGAAANGCCCGGGTAACCCGCTGAACCTCCTTCGTGCCAGGGATTGGGGCTTG 9368 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || ||| | |||||||||| || |||||||||| || || ||| |||| ||||| Sbjct 9369 CAATTGTTTCTCATAAACGAGGAATTCCCAGTAAGCGCGAGTAATAAGCTCGCGGTGATT 9428 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 9429 ACGTCCCTGCCCTTTGTA 9446 >seq1389 Length=39678 Score = 168 bits (186), Expect = 1e-39 Identities = 196/258 (76%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| ||||||||||||| || Sbjct 31061 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTATG 31118 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||| ||||||||||||||||||||| || || || | | || Sbjct 31119 ATGCCCTTAGATGTTCTGAGCCGCACGCGCGCTACACTGAAGGAATCAGCGTG-TGTTCT 31177 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | || ||| |||| | | || | | || || | | ||| | |||| | | ||| Sbjct 31178 C--TGACCGAAAGGCCCGAGTGCCCCGCTGAACCTTTTTTGTGTTAAGGATTGGGGCTTG 31235 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| | |||||||||| || || ||| || ||||||| Sbjct 31236 CAATTGTTCCCCATGAACGAGGAATTTCCAGTAAGCGCGAGTTATAAGCTCGGGTTGATT 31295 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||| |||||||||||| Sbjct 31296 ACGTCTCTGCCCTTTGTA 31313 >seq880 Length=49736 Score = 138 bits (152), Expect = 2e-30 Identities = 189/258 (73%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||| |||| Sbjct 41637 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACATATCTGCA 41580 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| ||| |||||| |||| | ||||||||||||||| | || || || || | Sbjct 41579 ATGCTCTTTGATGTTTTGGGTCACACGCGCGCTACACTAAAGGAATCAGCGTGT--GTTG 41522 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | ||| || | |||||| | | || ||| | ||||| ||||| | | ||| Sbjct 41521 CC-TCACCGAAAAAACCGGGTAACCCGCTGAACCTCCTTTGTGCTAGGGATTGGGGCTTG 41463 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || ||||| |||| ||||| ||| | |||| ||| Sbjct 41462 CAATTGTTCCCCATAAACGAGGAATTCCCAGTAAACGCGAGTCATAAGCTCACGTTAATT 41403 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||| ||||| |||||| Sbjct 41402 ACGTCTCTGCCTTTTGTA 41385 >seq3753 Length=7174 Score = 134 bits (148), Expect = 3e-29 Identities = 186/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 76 TTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||||||||| ||||| | ||||| || | ||||| |||||||| |||| |||| Sbjct 1288 TTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAAATCTGCAATGC 1231 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 ||| |||||| |||| ||||||||||||||||||| || || || || | || | Sbjct 1230 TCTTTGATGTTTTGGGTCGCACGCGCGCTACACTGAAGGAATCAGCGTGT--GTTGCC-T 1174 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||| || | |||||| | | || ||| | ||||| |||| | | ||||||| Sbjct 1173 CACCGAAAAACCCGGGTAACCCGCTGAACCTCCTTTGTGCTAGGGAGTGGGGCTTGCAAT 1114 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | || | | | |||||||||| || ||||| |||| ||||| ||| | |||| ||||||| Sbjct 1113 TGTTCCCCATGAACGAGGAATTCCCAGTAAACGCGAGTCATAAGCTCACGTTAATTACGT 1054 Query 315 CCCTGCCCTTTGTA 328 | ||||| |||||| Sbjct 1053 CTCTGCCTTTTGTA 1040 >seq901 Length=49467 Score = 116 bits (128), Expect = 7e-24 Identities = 88/100 (88%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| ||| ||||| |||||||| ||||||| Sbjct 27661 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCAC-AAGATTGAG-CAATAACAAGTCTGTG 27718 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||| Sbjct 27719 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 27758 >seq3527 Length=12440 Score = 107 bits (118), Expect = 4e-21 Identities = 86/100 (86%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| ||||| | ||||| || | ||||| ||||||||||||||| Sbjct 876 CTTTTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTA 933 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||| ||| Sbjct 934 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGA 973 >seq2321 Length=22588 Score = 84.2 bits (92), Expect = 4e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| || |||||||||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 19352 AGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 19294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947137901568