Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq12171 154 2e-35 seq16241 140 5e-31 >seq12171 Length=17760 Score = 154 bits (170), Expect = 2e-35 Identities = 179/229 (78%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 10750 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 10693 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 10692 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 10636 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 10635 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 10579 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 10578 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 10531 >seq16241 Length=12073 Score = 140 bits (154), Expect = 5e-31 Identities = 166/214 (78%), Gaps = 12/214 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 1139 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 1082 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 1081 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 1025 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 1024 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 968 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTG 210 || |||||| |||||||||||||||||||||||| Sbjct 967 GCAGCCCAGGACATCTAAGGGCATCACAGACCTG 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751368609050