Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq31920 84.2 3e-14 seq76882 77.0 5e-12 >seq31920 Length=4017 Score = 84.2 bits (92), Expect = 3e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 |||||| |||| |||| ||||||||| | ||||||||||| |||||||| | ||| || Sbjct 1231 TGGCACACCTTATCCCTAAGTTACGGTGTCATTTTGCCGAGTTCCTTAATGATTGTTAAC 1290 Query 200 CCGAACGCCTTAGTATTCTCTACCTG 225 | |||||||| |||| |||||| || Sbjct 1291 TCAAACGCCTTTGTATACTCTACTTG 1316 >seq76882 Length=1175 Score = 77.0 bits (84), Expect = 5e-12 Identities = 70/87 (80%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| |||||||||||||| | || |||||||| |||||||| | |||| Sbjct 588 TGGCCCTCCTTATCCCGAAGTTACGGTAGTCAATTTGCCGAGTTCCTTAATGATTGTTCG 647 Query 199 CCCGAACGCCTTAGTATTCTCTACCTG 225 | | |||||||| ||||||||||| || Sbjct 648 CTCAAACGCCTTTGTATTCTCTACTTG 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693816970910