Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq76882 125 2e-26 seq31920 102 2e-19 seq9280 75.2 3e-11 >seq76882 Length=1175 Score = 125 bits (138), Expect = 2e-26 Identities = 198/279 (71%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| || ||| ||||||||||||| | | |||||||| Sbjct 216 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGGCAATCATCGAGACAGCTGTTGT 275 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| | ||||| ||| || | | | ||| | | ||||| |||| |||||||||||| Sbjct 276 ATCGTTAAGTCATTCATGCTGGACCGCATTTAACGGCCAAGGTATTTAGCTACCTTAGGA 335 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || | || ||||||| || | ||||| || |||||| || |||| || Sbjct 336 CCCTCATAGATAAGGCCGCCATTAATCGGGGTGTCCTTCAAGACCT--CAGTTA--AAAA 391 Query 187 CCCA--TCAA----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CT 239 || | | || ||| || ||| || |||||| | |||||| | |||| | | | Sbjct 392 CCAAGGTAAATTCGTTACCCAGCCGACATTGGGCAGACATCACACTCAATACTTTGATAT 451 Query 240 TTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 || | |||||||||||||||||||||| |||||||||| Sbjct 452 TTTATCTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCG 490 >seq31920 Length=4017 Score = 102 bits (112), Expect = 2e-19 Identities = 281/424 (66%), Gaps = 20/424 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| Sbjct 898 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 957 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | ||||| ||| ||||||||||||| Sbjct 958 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTCCGCTACCTTAGGA 1017 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC-------TTCGCGTT 179 || | || | || ||||||| || | |||| ||| |||| | | || || Sbjct 1018 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTTTCCTTCAAAACCTAGCTTATTTTAGTC 1077 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 ||||| || |||||| || || ||||||| | |||| | |||| | | | Sbjct 1078 GGCTAAGAAAATTCGTTAACCAGCCAACATCGGGCAGAATTAACACTCAATACTTTGATT 1137 Query 240 T-TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG--CAGCGGCCTGGTAT-CT 294 | || | || |||| |||||| |||||| | |||||||||| || | | ||| | Sbjct 1138 TATCATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCGTACAACACCACTCTATGCC 1197 Query 295 TCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAA 354 || | | | | |||| | | ||| | | ||| |||||| |||| || Sbjct 1198 TC--CTATCCTTAACTTA-----ATATTACTT-AAGAAGAATGGCACACCTTATCCCTAA 1249 Query 355 GTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCT 414 ||||||||| | ||||||| |||||||| ||| ||||| |||||| |||| || Sbjct 1250 GTTACGGTGTCATTTTGCCGAGTTCCTTAATGATTGTTAACTCAAACGCCTTTGTATACT 1309 Query 415 CTAC 418 |||| Sbjct 1310 CTAC 1313 >seq9280 Length=24550 Score = 75.2 bits (82), Expect = 3e-11 Identities = 100/139 (72%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||| | | | |||||||||||| | | ||||||| | ||||||| Sbjct 13706 ATCTTCACGACCACTCCAATTTCACTGAACTTACCCTTGAGACAGTGGACCCATCGTGCT 13647 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 |||||| |||||| | | ||| | ||||||||||||||||||||| | | |||| Sbjct 13646 TCCATTCATGCAGGACCATAATTAGTGGCCAAGGAATTTCGCTACCTTAGAATCCTTATA 13587 Query 135 GTTACGGCCGCCGTTTACC 153 |||| | | || ||||||| Sbjct 13586 GTTAAGACTGCTGTTTACC 13568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259707264640