Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq76882 78.8 2e-12 seq31920 75.2 2e-11 >seq76882 Length=1175 Score = 78.8 bits (86), Expect = 2e-12 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||| | || | ||||||| ||||||| Sbjct 224 ATCTGCACTGCTATTCCAATTTCACTGAGGCAATCATCGAGACAGCTGTTGTATCGTTAA 283 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 | | ||| ||| || | | | ||| | | ||||| |||| |||||||||||||| | ||| Sbjct 284 GTCATTCATGCTGGACCGCATTTAACGGCCAAGGTATTTAGCTACCTTAGGACCCTCATA 343 Query 129 GTTACGGCCGCCGTTTACTGGGG 151 | || ||||||| || | |||| Sbjct 344 GATAAGGCCGCCATTAATCGGGG 366 >seq31920 Length=4017 Score = 75.2 bits (82), Expect = 2e-11 Identities = 104/146 (71%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||| | || ||||||||| ||||||| Sbjct 906 ATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGTATCGTTAA 965 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 | ||| ||| | | | | ||| | | ||||| ||| ||||||||||||||| | || Sbjct 966 ATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTCCGCTACCTTAGGACCCTCATC 1025 Query 129 GTTACGGCCGCCGTTTACTGGGGCTT 154 | || ||||||| || | ||||| || Sbjct 1026 GGTAAGGCCGCCATTGATTGGGGTTT 1051 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 ||||| |||| |||||||||||||| |||||||||||||||||||||| || ||| Sbjct 1232 GGCACACCTTATCCCTAAGTTACGGTGTCATTTTGCCGAGTTCCTTAATGATTGTT 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061479217920