Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq12171 304 2e-80 seq14038 297 3e-78 seq11605 167 4e-39 seq79540 159 6e-37 >seq12171 Length=17760 Score = 304 bits (336), Expect = 2e-80 Identities = 216/244 (89%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 15816 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 15757 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 15756 -TGAATGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 15698 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 15697 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 15638 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 |||||||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 15637 CCTGTGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 15579 Query 269 GGCC 272 |||| Sbjct 15578 GGCC 15575 >seq14038 Length=14874 Score = 297 bits (328), Expect = 3e-78 Identities = 211/238 (89%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | | Sbjct 10792 AGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-TGAAT 10734 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| Sbjct 10733 GGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCG 10674 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 10673 AAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 10614 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 |||||||||||| ||||||| | | ||| || | | |||||||||||||||| Sbjct 10613 GTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 10557 Score = 111 bits (122), Expect = 3e-22 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 10881 GTCATTAGTAGAGTAAAGCTAACCTCTCTCACGACGGTCTAAACCCAGCTCACATTCCCT 10822 Query 90 ATTAGTGGGTGAACAATCCAACGCTT 115 | | ||||||||||||||||||||| Sbjct 10821 -TAAATGGGTGAACAATCCAACGCTT 10797 >seq11605 Length=18810 Score = 167 bits (184), Expect = 4e-39 Identities = 117/132 (89%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATG 136 ||||||||||||| | | ||||||||||||||||||||| ||||| |||||| ||| Sbjct 13303 GCTCACGTTCCCT-TGAATGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATG 13245 Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||| |||| Sbjct 13244 ATAGGAAGCGCCGGCATCGAAAGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA 13185 Query 197 CAAGCCAGTTAT 208 |||||||||||| Sbjct 13184 CAAGCCAGTTAT 13173 >seq79540 Length=1124 Score = 159 bits (176), Expect = 6e-37 Identities = 116/132 (88%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATG 136 |||||||||||| | | ||||||||||||||||||||| ||||| |||||| || Sbjct 434 GCTCACGTTCCCC-TGAATGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCAAAATA 376 Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| Sbjct 375 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGC-TGGCCGCCA 317 Query 197 CAAGCCAGTTAT 208 |||| ||||||| Sbjct 316 CAAGGCAGTTAT 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853659491520