Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq12171 477 3e-132 seq4735 477 3e-132 seq7033 194 5e-47 seq14038 168 2e-39 seq13841 89.7 2e-15 >seq12171 Length=17760 Score = 477 bits (528), Expect = 3e-132 Identities = 330/375 (88%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 15214 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAA 15155 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||| ||||||||||| |||||||||| | ||| | ||| | | Sbjct 15154 ATAACCGAAATTAAATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGGCA 15095 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 15094 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 15035 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15034 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 14975 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14974 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 14915 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 14914 CCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 14855 Query 519 CACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 14854 CACATTGTGTCAACA 14840 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 15520 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 15461 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 15460 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGCCAATGTC 15414 >seq4735 Length=48183 Score = 477 bits (528), Expect = 3e-132 Identities = 330/375 (88%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | ||| Sbjct 7520 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAA 7461 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||| ||||||||||| |||||||||| | ||| | ||| | | Sbjct 7460 ATAACCGAAATTAAATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGGCA 7401 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 7400 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 7341 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7340 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 7281 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7280 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 7221 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 7220 CCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 7161 Query 519 CACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 7160 CACATTGTGTCAACA 7146 Score = 147 bits (162), Expect = 7e-33 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || |||||||||| | ||| | ||| | | ||||||||||||||||||||||||||| Sbjct 1280 ATGCTACACCTCTTATGTCTCCTTACACTGGCAGACTAGAGTCAAGCTCAACAGGGTCTT 1339 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1340 CTTTCCCCGCTAATTATTCCAGGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 1399 Query 366 A 366 | Sbjct 1400 A 1400 >seq7033 Length=33228 Score = 194 bits (214), Expect = 5e-47 Identities = 161/198 (81%), Gaps = 13/198 (7%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--------CCGAAACGG--- 236 ||||||| |||| ||||| |||||||||||||| | ||| |||||| Sbjct 14309 TAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAAATAACCGAAATTAAAT 14250 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| | ||| | ||| | | |||||||||||||||| Sbjct 14249 ATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGGCAGACTAGAGTCAAGCTC 14190 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 14189 AACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 14130 Query 355 AGATAGTAGATAGGGACA 372 |||||||||||||||||| Sbjct 14129 AGATAGTAGATAGGGACA 14112 >seq14038 Length=14874 Score = 168 bits (186), Expect = 2e-39 Identities = 165/214 (77%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| | | ||||||| |||| ||||| |||||||||||||| | || Sbjct 10196 GTTCCACTTATTCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTCGATAA 10137 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||| ||||| ||||| ||||| |||| | ||| | || | | Sbjct 10136 ATAACCGAAATTAAATATCTCCCCCTTATGCTACATCTCTTATGTCTCCTTACCCTGGCA 10077 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| Sbjct 10076 GACTAGAGTCAAGCTCAACAGGGTCTTCCTTCCCCGTTAATTATTCCAAGCCCGTTCCCT 10017 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 |||||||||||||||||||||||||||||||||| Sbjct 10016 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 9983 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 10502 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 10443 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 10442 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGCCAATGTC 10396 >seq13841 Length=15147 Score = 89.7 bits (98), Expect = 2e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||| ||| Sbjct 11757 ACAGTGGTAATCTCGTTAATCCATTCATGCGTGTCACTATTTAGATTACGAGGCACTTGA 11698 Query 430 CTACCTT 436 |||| || Sbjct 11697 CTACTTT 11691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633782772160