Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq12171 425 2e-116 seq3435 172 2e-40 seq18449 80.6 8e-13 >seq12171 Length=17760 Score = 425 bits (470), Expect = 2e-116 Identities = 412/520 (79%), Gaps = 20/520 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 9457 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 9398 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 9397 CCTCCCCGAACTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 9338 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 9337 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 9278 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 9277 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 9218 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCA----AGGAGC-CCCGAA 290 | | | |||| ||| || ||||||| || | |||| || | | | || Sbjct 9217 GTACGGGACCATACGA-TCTGCAAGTTATCTAGAGTTCAACCAATATAGTAACGATCCAA 9159 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTA--GCA 346 | || | | |||| |||||||| ||| | |||| || ||| | |||| || ||| Sbjct 9158 GATCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCAAAAGGTCCGTGTTTATATTGCA 9099 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACG 404 ||||||||||||||||||||||| |||||||| ||| | || || ||| | ||| Sbjct 9098 TGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTATGGAACC 9041 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||| ||||||||| || || |||||||| | || ||| || |||||||||||| Sbjct 9040 ATAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTTGTTTGTACTTAGACATG 8982 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| ||||||||||| Sbjct 8981 CATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 8942 >seq3435 Length=63382 Score = 172 bits (190), Expect = 2e-40 Identities = 135/158 (85%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAA 397 || |||||||||||||||||||||||||| |||||||| ||| || ||||| ||| | Sbjct 45763 TTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACGATCTA 45705 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| ||||||||||||||||||||||||| ||||||| || | || || | |||| Sbjct 45704 AGGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-ATATGGCGTGTACTG 45646 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 ||||||||||||||||||||||||||||||||||| || Sbjct 45645 AGACATGCATGGCTTAATCTTTGAGACAAGCATATCAC 45608 Score = 172 bits (190), Expect = 2e-40 Identities = 135/158 (85%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAA 397 || |||||||||||||||||||||||||| |||||||| ||| || ||||| ||| | Sbjct 46542 TTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACGATCTA 46484 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| ||||||||||||||||||||||||| ||||||| || | || || | |||| Sbjct 46483 AGGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-ATATGGCGTGTACTG 46425 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 ||||||||||||||||||||||||||||||||||| || Sbjct 46424 AGACATGCATGGCTTAATCTTTGAGACAAGCATATCAC 46387 >seq18449 Length=9948 Score = 80.6 bits (88), Expect = 8e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct 3 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGTATATAACTACTAGCAG 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509090936320