Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_007902.1
Length=52162
Score E
Sequences producing significant alignments: (Bits) Value
seq16721 107 6e-19
seq2826 96.9 1e-15
>seq16721
Length=11562
Score = 107 bits (118), Expect = 6e-19
Identities = 232/341 (68%), Gaps = 16/341 (5%)
Strand=Plus/Minus
Query 23584 CAGCTCCAGCAT---ATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCAC 23640
||| | |||||| ||| || || || || |||||| ||||| ||||||||||||
Sbjct 5723 CAGATACAGCATCAGATCGCGCGTGCGGATATGCTTCATGACCAGCGACAGCAGCGCCAC 5664
Query 23641 CCGGCGATGGGTCAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGC 23700
| ||| || ||| | ||| ||||||||||| | ||||||||| ||||||| || |
Sbjct 5663 ACTGCGGTGCTGCAGCAGTTCTTCATCCGGTATGACCGTGATATCGGCCAGCGGGAAGGG 5604
Query 23701 CTGATGATAAACCGTGGC--CGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTG 23758
|| || || || || ||| | ||| || ||| | ||||| |||| ||| |
Sbjct 5603 TTG--CGTATACAGTCGCCGCGCGAGTTCCGGTTCATCGAAACACGCCAGCCAGTCCACC 5546
Query 23759 CTGTACGGATACGGCGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGC 23818
||| || | ||| || || | || |||||||||| || || |||||||| | |
Sbjct 5545 GGGTAAGGGTGCGGTGAGGTTTTCCCCGCATAAAACAGCAAAGGGATCACCACCGGCA-C 5487
Query 23819 TGATCGTTGC-CCTGTTCT-----AGATGCCGCTGCATCGCGGCGACCGCATACCGTAGC 23872
| | |||| | ||| || | ||| |||||||||| |||| || || || | |
Sbjct 5486 AGTT--TTGCTCTTGTGCTGCGTAATGTGCTGCTGCATCGCCGCGATGGCGTATCGCATC 5429
Query 23873 AATCGAAACGCCATCAGCTTTTCCGGGCGGCTCTGGTGCTC 23913
| ||||| | |||||| | ||||| |||||||||||
Sbjct 5428 AGGCGAAAGCCGATCAGCCTGTCCGGCGAACTCTGGTGCTC 5388
>seq2826
Length=74223
Score = 96.9 bits (106), Expect = 1e-15
Identities = 333/506 (66%), Gaps = 19/506 (4%)
Strand=Plus/Minus
Query 23593 CATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGT 23652
|| |||||| || ||||||||||||| ||| ||| ||||| | ||||||
Sbjct 70093 CAGATCACGCTGCCGGATGTGCTTCTGCAACAGGGTCAGAGCCGCCATGCTGCGATGTTG 70034
Query 23653 CAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAA--TGCCTGATGATAA 23710
|| ||| || || || || || | |||| |||||||||| |||| || | | || |||
Sbjct 70033 CATGATCTCATCGTCAGGAATCACCGTGACATCGACCAGCTGAAAACTG-CGGCTG-TAA 69976
Query 23711 ACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATAC 23770
| | || |||||| | || || | || ||||| || || || || |||||
Sbjct 69975 AGCCTGTCCGCCAGCGCCGGGTCGTCGAACTCATCCAGCCACCGGGTCGAATAGGGATAT 69916
Query 23771 GGCG-ACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCC 23829
|| | ||| |||| ||||||||| | ||||| |||| ||| | | | | ||||
Sbjct 69915 GGAGTGCGT-CTGCCAGTGTAAAACAGTACGGGAATTACCAGCGGCAACCGCT-TATGCC 69858
Query 23830 CTG-TTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCA 23888
||| ||| ||||| |||||||| || || || ||||| || | || ||||| |||||
Sbjct 69857 CTGCTTCAAGATGGCGCTGCATGGCAGCCACTGCATAGCGCATCAGCCGAAATGCCATAT 69798
Query 23889 GCTTTTCCGGGCGGCTCTGGTGCTCTATCAG-ACAGTAGACGTAACCATCATGGCCCGTC 23947
| || || || ||| ||||| || || ||| | || || ||||| ||| |
Sbjct 69797 GTTTGTCTGGCACAGACTGATGCTCAATGAGTACA-TGGATATATCCATC---GCCAGCG 69742
Query 23948 GTGGTCTTCATCGAGTAGAGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATA 24004
|| || || | ||| |||| || || |||| | ||||| || |||| |
Sbjct 69741 GTTGTTTTAAGACTGTAAAGCACGTCGCTAAAGTACTG---CCGAAGGTCATCCTCGACA 69685
Query 24005 AATGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGC 24064
||||| || || ||| || |||| || ||| |||| | || || | ||||||
Sbjct 69684 AATGACCCCGACTCCAGTTTCAGCGTGCTGAGATCACAGCATATGCGAAGCTCTGGCGGC 69625
Query 24065 AGATGGATTTCCAGAAAGTCCCGAGC 24090
| ||| | |||| || ||||| ||
Sbjct 69624 AAATGCAGCTCCATGAAATCCCGGGC 69599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 166625131690960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |