Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq16721 107 6e-19 seq2826 96.9 1e-15 >seq16721 Length=11562 Score = 107 bits (118), Expect = 6e-19 Identities = 232/341 (68%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 23584 CAGCTCCAGCAT---ATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCAC 23640 ||| | |||||| ||| || || || || |||||| ||||| |||||||||||| Sbjct 5723 CAGATACAGCATCAGATCGCGCGTGCGGATATGCTTCATGACCAGCGACAGCAGCGCCAC 5664 Query 23641 CCGGCGATGGGTCAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGC 23700 | ||| || ||| | ||| ||||||||||| | ||||||||| ||||||| || | Sbjct 5663 ACTGCGGTGCTGCAGCAGTTCTTCATCCGGTATGACCGTGATATCGGCCAGCGGGAAGGG 5604 Query 23701 CTGATGATAAACCGTGGC--CGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTG 23758 || || || || || ||| | ||| || ||| | ||||| |||| ||| | Sbjct 5603 TTG--CGTATACAGTCGCCGCGCGAGTTCCGGTTCATCGAAACACGCCAGCCAGTCCACC 5546 Query 23759 CTGTACGGATACGGCGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGC 23818 ||| || | ||| || || | || |||||||||| || || |||||||| | | Sbjct 5545 GGGTAAGGGTGCGGTGAGGTTTTCCCCGCATAAAACAGCAAAGGGATCACCACCGGCA-C 5487 Query 23819 TGATCGTTGC-CCTGTTCT-----AGATGCCGCTGCATCGCGGCGACCGCATACCGTAGC 23872 | | |||| | ||| || | ||| |||||||||| |||| || || || | | Sbjct 5486 AGTT--TTGCTCTTGTGCTGCGTAATGTGCTGCTGCATCGCCGCGATGGCGTATCGCATC 5429 Query 23873 AATCGAAACGCCATCAGCTTTTCCGGGCGGCTCTGGTGCTC 23913 | ||||| | |||||| | ||||| ||||||||||| Sbjct 5428 AGGCGAAAGCCGATCAGCCTGTCCGGCGAACTCTGGTGCTC 5388 >seq2826 Length=74223 Score = 96.9 bits (106), Expect = 1e-15 Identities = 333/506 (66%), Gaps = 19/506 (4%) Strand=Plus/Minus Query 23593 CATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGT 23652 || |||||| || ||||||||||||| ||| ||| ||||| | |||||| Sbjct 70093 CAGATCACGCTGCCGGATGTGCTTCTGCAACAGGGTCAGAGCCGCCATGCTGCGATGTTG 70034 Query 23653 CAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAA--TGCCTGATGATAA 23710 || ||| || || || || || | |||| |||||||||| |||| || | | || ||| Sbjct 70033 CATGATCTCATCGTCAGGAATCACCGTGACATCGACCAGCTGAAAACTG-CGGCTG-TAA 69976 Query 23711 ACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATAC 23770 | | || |||||| | || || | || ||||| || || || || ||||| Sbjct 69975 AGCCTGTCCGCCAGCGCCGGGTCGTCGAACTCATCCAGCCACCGGGTCGAATAGGGATAT 69916 Query 23771 GGCG-ACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCC 23829 || | ||| |||| ||||||||| | ||||| |||| ||| | | | | |||| Sbjct 69915 GGAGTGCGT-CTGCCAGTGTAAAACAGTACGGGAATTACCAGCGGCAACCGCT-TATGCC 69858 Query 23830 CTG-TTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCA 23888 ||| ||| ||||| |||||||| || || || ||||| || | || ||||| ||||| Sbjct 69857 CTGCTTCAAGATGGCGCTGCATGGCAGCCACTGCATAGCGCATCAGCCGAAATGCCATAT 69798 Query 23889 GCTTTTCCGGGCGGCTCTGGTGCTCTATCAG-ACAGTAGACGTAACCATCATGGCCCGTC 23947 | || || || ||| ||||| || || ||| | || || ||||| ||| | Sbjct 69797 GTTTGTCTGGCACAGACTGATGCTCAATGAGTACA-TGGATATATCCATC---GCCAGCG 69742 Query 23948 GTGGTCTTCATCGAGTAGAGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATA 24004 || || || | ||| |||| || || |||| | ||||| || |||| | Sbjct 69741 GTTGTTTTAAGACTGTAAAGCACGTCGCTAAAGTACTG---CCGAAGGTCATCCTCGACA 69685 Query 24005 AATGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGC 24064 ||||| || || ||| || |||| || ||| |||| | || || | |||||| Sbjct 69684 AATGACCCCGACTCCAGTTTCAGCGTGCTGAGATCACAGCATATGCGAAGCTCTGGCGGC 69625 Query 24065 AGATGGATTTCCAGAAAGTCCCGAGC 24090 | ||| | |||| || ||||| || Sbjct 69624 AAATGCAGCTCCATGAAATCCCGGGC 69599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166625131690960