Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_032146.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
seq6463 233 2e-58
>seq6463
Length=35964
Score = 233 bits (258), Expect = 2e-58
Identities = 477/698 (68%), Gaps = 8/698 (1%)
Strand=Plus/Minus
Query 259 TGTACCAATGATTCACCTAAATGATGTCTTTCAGGAG-GATCTTCCAATCTGGAGTTCAT 317
||| |||||| | || || |||||||| ||||| || ||||| || || ||| ||||
Sbjct 34944 TGTTCCAATGCTACATCTTAATGATGT-TTTCAAAAGAGATCTCCCTATTTGGTCATCAT 34886
Query 318 CACCTGGGCTTCCATGGATGCAATGCGGATATA-GAACAAAGAATGACATTCGTCGCGAC 376
| || || || || |||||| | || |||| || ||||| |||||| | ||
Sbjct 34885 CCCCCGGACTACCTTGGATGAATCATGGCTATAAGACCAAAGG-TGACATCAAAAGAGAT 34827
Query 377 CCCGACGCGATCAACCGCATTAGGCACTTCTGGCATAGAATTAA-ATGTTTCGAA-GAAG 434
|| || ||||| | | || || || ||||||||| |||| ||| | || || |
Sbjct 34826 CCTGATGCGATTCAGAGGATAAGATGGTTTTGGCATAGAGTTAAGATGGGTGAAAAGATG 34767
Query 435 TACATCTACCGGACTGTTGTGCATATGTGCGTACACATATTGTTGAGCGTGGCGAGACAA 494
| ||| | || || ||||||| ||||| | | ||||| || |||| ||||| ||||
Sbjct 34766 T-CAT-TCCCAGATAGTTGTGCTTATGTCAGAGCGCATATAGTAAAGCGAGGCGAAACAA 34709
Query 495 AAGTCCGTGCAGTGTGGGGTTATCCGGCAACGGTGACCTTTGGCGAAGCAGTATTTGCAC 554
| || | ||||| |||| ||||| || || || ||| | || ||||||||||||||||
Sbjct 34708 AGGTTAGAGCAGTATGGGAATATCCAGCCACTGTCACCCTAGGGGAAGCAGTATTTGCAC 34649
Query 555 TCCCCCTGATTCAAGCGTATAAGAAGGGAGGATATCCTATTGCATATGGATTTGAGACCG 614
|||| || ||| | || || || | || |||||||| || || ||||||| ||| || |
Sbjct 34648 TCCCGCTTATTGATGCCTACAAAAGAGGCGGATATCCAATAGCCTATGGATATGAAACTG 34589
Query 615 GCAACGCTGGTTGTAAGAAGATGTTCCATGGTATGAAGGGCAACCACTACCTTGGAATTG 674
| | || || ||||| ||||| | || | | || || || | | |||||| || |
Sbjct 34588 GAATGGCCGGCTGTAAAAAGATCTATCAAAATTTTAAAGGGAATTATTTCCTTGGCATCG 34529
Query 675 ATTTCACCAGTTTTGATAAGACCCTTCCACCATGGCTGGTCTCCACGGCCTTTGACATAC 734
|||| | |||||| ||||||| |||||||| ||| || | | || |||||| |
Sbjct 34528 ATTTTAAAAGTTTTTATAAGACGCTTCCACCGTGGTTGATTGAAATTGCTTTTGACGTTT 34469
Query 735 TGGCCTATAACATTGATTTTCTACACTATCGAGATCACGGAATTGCTCGTGTCAAATCAA 794
| | ||||| || || ||| || || |||| |||| |||| | ||| | |
Sbjct 34468 TATCATATAATATCGACTTTGTAAGGTACAAAGATTACGGTGTTGCAAGATGCAACGCTA 34409
Query 795 TGGTCCATATGTTTAACGTTATTAAGGATTACGCCATTAACACGAAAATACGCATGTGTA 854
|||| | |||||| | | || ||| ||| | || | || | ||||| |
Sbjct 34408 TGGTGGACATGTTTGAACAGCTGCGCGACTACTGCATACATACTACGATTAGGATGTGCA 34349
Query 855 ATGGAGAAAGATATATAAAGAAAAGTGGTCTTGCAAGTGGAAGTTACTTTACACAGCTTG 914
| || ||||||||||| ||| | |||||||| || || ||||| ||||| ||| |
Sbjct 34348 ACGGCGAAAGATATATTAAGCATTCAGGTCTTGCTAGCGGTAGTTATTTTACCCAGTTGA 34289
Query 915 TTGGCAGTGTTTGTAACTACCTGCTCCTTACTTATGCC 952
|||| ||| | ||| ||| |||| || || ||||||
Sbjct 34288 TTGGAAGTATCGCTAATTACTTGCTACTAACCTATGCC 34251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4613347796460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |