Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_032146.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value seq6463 233 2e-58 >seq6463 Length=35964 Score = 233 bits (258), Expect = 2e-58 Identities = 477/698 (68%), Gaps = 8/698 (1%) Strand=Plus/Minus Query 259 TGTACCAATGATTCACCTAAATGATGTCTTTCAGGAG-GATCTTCCAATCTGGAGTTCAT 317 ||| |||||| | || || |||||||| ||||| || ||||| || || ||| |||| Sbjct 34944 TGTTCCAATGCTACATCTTAATGATGT-TTTCAAAAGAGATCTCCCTATTTGGTCATCAT 34886 Query 318 CACCTGGGCTTCCATGGATGCAATGCGGATATA-GAACAAAGAATGACATTCGTCGCGAC 376 | || || || || |||||| | || |||| || ||||| |||||| | || Sbjct 34885 CCCCCGGACTACCTTGGATGAATCATGGCTATAAGACCAAAGG-TGACATCAAAAGAGAT 34827 Query 377 CCCGACGCGATCAACCGCATTAGGCACTTCTGGCATAGAATTAA-ATGTTTCGAA-GAAG 434 || || ||||| | | || || || ||||||||| |||| ||| | || || | Sbjct 34826 CCTGATGCGATTCAGAGGATAAGATGGTTTTGGCATAGAGTTAAGATGGGTGAAAAGATG 34767 Query 435 TACATCTACCGGACTGTTGTGCATATGTGCGTACACATATTGTTGAGCGTGGCGAGACAA 494 | ||| | || || ||||||| ||||| | | ||||| || |||| ||||| |||| Sbjct 34766 T-CAT-TCCCAGATAGTTGTGCTTATGTCAGAGCGCATATAGTAAAGCGAGGCGAAACAA 34709 Query 495 AAGTCCGTGCAGTGTGGGGTTATCCGGCAACGGTGACCTTTGGCGAAGCAGTATTTGCAC 554 | || | ||||| |||| ||||| || || || ||| | || |||||||||||||||| Sbjct 34708 AGGTTAGAGCAGTATGGGAATATCCAGCCACTGTCACCCTAGGGGAAGCAGTATTTGCAC 34649 Query 555 TCCCCCTGATTCAAGCGTATAAGAAGGGAGGATATCCTATTGCATATGGATTTGAGACCG 614 |||| || ||| | || || || | || |||||||| || || ||||||| ||| || | Sbjct 34648 TCCCGCTTATTGATGCCTACAAAAGAGGCGGATATCCAATAGCCTATGGATATGAAACTG 34589 Query 615 GCAACGCTGGTTGTAAGAAGATGTTCCATGGTATGAAGGGCAACCACTACCTTGGAATTG 674 | | || || ||||| ||||| | || | | || || || | | |||||| || | Sbjct 34588 GAATGGCCGGCTGTAAAAAGATCTATCAAAATTTTAAAGGGAATTATTTCCTTGGCATCG 34529 Query 675 ATTTCACCAGTTTTGATAAGACCCTTCCACCATGGCTGGTCTCCACGGCCTTTGACATAC 734 |||| | |||||| ||||||| |||||||| ||| || | | || |||||| | Sbjct 34528 ATTTTAAAAGTTTTTATAAGACGCTTCCACCGTGGTTGATTGAAATTGCTTTTGACGTTT 34469 Query 735 TGGCCTATAACATTGATTTTCTACACTATCGAGATCACGGAATTGCTCGTGTCAAATCAA 794 | | ||||| || || ||| || || |||| |||| |||| | ||| | | Sbjct 34468 TATCATATAATATCGACTTTGTAAGGTACAAAGATTACGGTGTTGCAAGATGCAACGCTA 34409 Query 795 TGGTCCATATGTTTAACGTTATTAAGGATTACGCCATTAACACGAAAATACGCATGTGTA 854 |||| | |||||| | | || ||| ||| | || | || | ||||| | Sbjct 34408 TGGTGGACATGTTTGAACAGCTGCGCGACTACTGCATACATACTACGATTAGGATGTGCA 34349 Query 855 ATGGAGAAAGATATATAAAGAAAAGTGGTCTTGCAAGTGGAAGTTACTTTACACAGCTTG 914 | || ||||||||||| ||| | |||||||| || || ||||| ||||| ||| | Sbjct 34348 ACGGCGAAAGATATATTAAGCATTCAGGTCTTGCTAGCGGTAGTTATTTTACCCAGTTGA 34289 Query 915 TTGGCAGTGTTTGTAACTACCTGCTCCTTACTTATGCC 952 |||| ||| | ||| ||| |||| || || |||||| Sbjct 34288 TTGGAAGTATCGCTAATTACTTGCTACTAACCTATGCC 34251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4613347796460