Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_032157.1 Length=1694 Score E Sequences producing significant alignments: (Bits) Value seq27831 295 7e-77 seq1067 221 1e-54 seq6 80.6 3e-12 >seq27831 Length=5066 Score = 295 bits (326), Expect = 7e-77 Identities = 350/472 (74%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 441 ATGCCTACAGGTCAACACCTGTCTAAAACTAATTCCGAATTGAAGAATGATCCTCTTTAT 500 |||||||| || ||||| | || ||||||||||| || ||||| || |||| |||||| Sbjct 364 ATGCCTACTGGACAACATTTATCAAAAACTAATTCTGAGTTGAAAAACAATCCCCTTTAT 423 Query 501 TTAGAAGCATTTTTTCCATCACCTAGCGAAGAGCTAGTTCCGTTGCCTGAAGAGCTCAAT 560 |||||||| ||||| || || || ||||| || | | |||||| | ||| Sbjct 424 TTAGAAGCGTTTTTCCCTTCTCCATTTGAAGAATTAAGAAT-TAAACAGAAGAGTTAAAT 482 Query 561 CATTTTACGGGTTTTGACGGTTTAAGTTCAATAATTAATGAAAGTTATGATAATTTTTGT 620 ||||| ||||||||||||||||| ||| |||||||||||| |||||| |||||||| Sbjct 483 GATTTTTTGGGTTTTGACGGTTTAACTTCGTTAATTAATGAAACTTATGAAAATTTTTGC 542 Query 621 TCACATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGCCTATTATATTTCT 680 | ||| | | ||||| || ||||| |||||||||| ||| ||||||||| || Sbjct 543 GCCTATAATCTTAATTTTAAACGTTCAATTTCATTATCAGCTTACCTTTATTATATTGCT 602 Query 681 GTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACA 740 ||| | | || || ||| || || || || | ||| || |||| | |||| ||| Sbjct 603 GTTCTATCCTGCGCTAGAATTTTATATAATAATAATATAA-TACATATAGATTAACTACA 661 Query 741 AATGAGATTGAATTTGTCGATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCT 800 ||| || |||||||| ||||||||||| | || || || || |||||||| || | Sbjct 662 GTTGAAATAGAATTTGTTGATATGATTTATGAACAGGGTAACTATTTACTTCCTAAAAGT 721 Query 801 GTTACTCTTTATCTTTCTGGCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAG 860 |||||| ||||||||||||| |||||||||||||| ||||| ||| | || ||||| || Sbjct 722 GTTACTATTTATCTTTCTGGTTTTGGTAATTTTACCATTCCTTCAGGCGTCGAATCAAAA 781 Query 861 TTTAACACAAAGCCGTATTCTTACGATGATGCCGGTTATTTTGTTAATTTTG 912 ||||| || ||||| ||| |||| | ||||||||||| ||||||| Sbjct 782 TTTAATACTAAGCCATATCAACACGACGCGAATGGTTATTTTGTAAATTTTG 833 >seq1067 Length=159154 Score = 221 bits (244), Expect = 1e-54 Identities = 401/586 (68%), Gaps = 22/586 (4%) Strand=Plus/Plus Query 700 TTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACAAATGAGATTGAATTTGTCG 759 || ||||| | || | |||||||||||| | |||| ||| |||| || |||||||| | Sbjct 8539 TTTTACATCTTAAGAGATTAAATAAATATAGATTAACTACAGATGAAATAGAATTTGTTG 8598 Query 760 ATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCTGTTACTCTTTATCTTTCTG 819 |||||||||| | | || || || |||||||| | |||||| ||| Sbjct 8599 ATATGATTTATCAAGAGGGTAACTATTTACTTCCTA------------TTTATCCTTCCT 8646 Query 820 GCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAGTTTAACACAAAGCCGTATT 879 | |||||||||||||| ||||| ||| | || ||||| || ||||| || ||||| ||| Sbjct 8647 GTTTTGGTAATTTTACCATTCCTTCAGGCGTCGAATCAAAATTTAATACTAAGCCATATC 8706 Query 880 CTTACGATGATGCCGGTTATTTTGTTAATTTTGCTGAAGAAT--TTTATACAGTAACGTC 937 | ||| | || |||||||| ||||||| | ||||| ||||| | | || Sbjct 8707 AATGCGACGCGAATGGCTATTTTGTAAATTTTGAT--AGAATACTTTATTTATGTTCTTC 8764 Query 938 CTATCCTTGCATTTCTATATTTGCAGAAAGGATTATGAGAGACATGGCGTTTACTGAGAA 997 ||||| || |||||||| ||||| || | || ||| | ||| | || |||||| || Sbjct 8765 ATATCCATGTATTTCTATTTTTGCTGAGCGTATAATGCGTGACCTCGCTTTTACT---AA 8821 Query 998 TAATCGAG---TCGGTGAAGCTTGGTCACCTAATGATATCGAGCAAGAATGGAACACTCG 1054 |||| || | ||||| | ||| | || || || | || || | ||||| || || Sbjct 8822 AAATCCAGATATTGGTGAGGAATGGGCTCCAAACGAATTAGAACATGTTTGGAATACACG 8881 Query 1055 GTGTCTAGGATATGCCCCATCCGTAGAATTGCCTTCATTACAGTTGCAAATACTGAATAT 1114 ||| |||| ||||| || ||| | || | | || | | | | || Sbjct 8882 CTGTATAGGTTATGCTCCTAGTGTAATTATACCCGCTATGCAATCTTCAGTGTTTGATCG 8941 Query 1115 GGCGGGTATATCTTCTGAAAATTTTCCTTCGGATTGTGAAGGTTTACTTATAAATATTAG 1174 || || ||| || || |||||||| |||| | | | || || || || || Sbjct 8942 AGCCATGATTACTTGAGATAACTTTCCTTCTGATTATTCGACTCTTCTCATTAACATAAG 9001 Query 1175 ATTGTTAAATTCTATTCAAAAATATTTACTTGAAATACCTAGCTTTGAATCAGGTCCTAT 1234 || | |||| ||||||||||||||| ||||||||||||||| ||||| ||||||| Sbjct 9002 GTTAATGAATTAAATTCAAAAATATTTAACTGAAATACCTAGCTTCGAATCTGGTCCTAA 9061 Query 1235 TCCTGCTAATTTAACTGGCTCGTTAGGTCAGTTTGTTGTTGAAGAA 1280 || |||||||||||||| || ||||| ||||||||| | ||||| Sbjct 9062 ACCCGCTAATTTAACTGGTTCATTAGGCCAGTTTGTTATGCAAGAA 9107 >seq6 Length=1101701 Score = 80.6 bits (88), Expect = 3e-12 Identities = 106/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 610 ATAATTTTTGTTCAC--ATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGC 667 ||| ||||| ||| | | | ||||||||| || | |||||||||| ||| |||||| Sbjct 269165 ATATTTTTTATTCGCTCACAATTTAAATTTTAAAAGATCTGTTTCATCATCCGCTTATGC 269224 Query 668 CTATTATATTTCTGTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATA 727 |||||||||| |||| || | ||||| | || ||||||||||| | | | ||| || Sbjct 269225 CTATTATATTGCTGTATTGTCATGGGCGCGCGTATTACATTTAAAAAGATGGAGTAAGTA 269284 Query 728 TCGCCTAACGACAAATGAGATTGAAT 753 | | | ||| | | || ||||||| Sbjct 269285 TAGGCCAACTAATGAAGAAATTGAAT 269310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5307108345200