Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_032157.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
seq27831 295 7e-77
seq1067 221 1e-54
seq6 80.6 3e-12
>seq27831
Length=5066
Score = 295 bits (326), Expect = 7e-77
Identities = 350/472 (74%), Gaps = 2/472 (0%)
Strand=Plus/Plus
Query 441 ATGCCTACAGGTCAACACCTGTCTAAAACTAATTCCGAATTGAAGAATGATCCTCTTTAT 500
|||||||| || ||||| | || ||||||||||| || ||||| || |||| ||||||
Sbjct 364 ATGCCTACTGGACAACATTTATCAAAAACTAATTCTGAGTTGAAAAACAATCCCCTTTAT 423
Query 501 TTAGAAGCATTTTTTCCATCACCTAGCGAAGAGCTAGTTCCGTTGCCTGAAGAGCTCAAT 560
|||||||| ||||| || || || ||||| || | | |||||| | |||
Sbjct 424 TTAGAAGCGTTTTTCCCTTCTCCATTTGAAGAATTAAGAAT-TAAACAGAAGAGTTAAAT 482
Query 561 CATTTTACGGGTTTTGACGGTTTAAGTTCAATAATTAATGAAAGTTATGATAATTTTTGT 620
||||| ||||||||||||||||| ||| |||||||||||| |||||| ||||||||
Sbjct 483 GATTTTTTGGGTTTTGACGGTTTAACTTCGTTAATTAATGAAACTTATGAAAATTTTTGC 542
Query 621 TCACATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGCCTATTATATTTCT 680
| ||| | | ||||| || ||||| |||||||||| ||| ||||||||| ||
Sbjct 543 GCCTATAATCTTAATTTTAAACGTTCAATTTCATTATCAGCTTACCTTTATTATATTGCT 602
Query 681 GTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACA 740
||| | | || || ||| || || || || | ||| || |||| | |||| |||
Sbjct 603 GTTCTATCCTGCGCTAGAATTTTATATAATAATAATATAA-TACATATAGATTAACTACA 661
Query 741 AATGAGATTGAATTTGTCGATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCT 800
||| || |||||||| ||||||||||| | || || || || |||||||| || |
Sbjct 662 GTTGAAATAGAATTTGTTGATATGATTTATGAACAGGGTAACTATTTACTTCCTAAAAGT 721
Query 801 GTTACTCTTTATCTTTCTGGCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAG 860
|||||| ||||||||||||| |||||||||||||| ||||| ||| | || ||||| ||
Sbjct 722 GTTACTATTTATCTTTCTGGTTTTGGTAATTTTACCATTCCTTCAGGCGTCGAATCAAAA 781
Query 861 TTTAACACAAAGCCGTATTCTTACGATGATGCCGGTTATTTTGTTAATTTTG 912
||||| || ||||| ||| |||| | ||||||||||| |||||||
Sbjct 782 TTTAATACTAAGCCATATCAACACGACGCGAATGGTTATTTTGTAAATTTTG 833
>seq1067
Length=159154
Score = 221 bits (244), Expect = 1e-54
Identities = 401/586 (68%), Gaps = 22/586 (4%)
Strand=Plus/Plus
Query 700 TTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACAAATGAGATTGAATTTGTCG 759
|| ||||| | || | |||||||||||| | |||| ||| |||| || |||||||| |
Sbjct 8539 TTTTACATCTTAAGAGATTAAATAAATATAGATTAACTACAGATGAAATAGAATTTGTTG 8598
Query 760 ATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCTGTTACTCTTTATCTTTCTG 819
|||||||||| | | || || || |||||||| | |||||| |||
Sbjct 8599 ATATGATTTATCAAGAGGGTAACTATTTACTTCCTA------------TTTATCCTTCCT 8646
Query 820 GCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAGTTTAACACAAAGCCGTATT 879
| |||||||||||||| ||||| ||| | || ||||| || ||||| || ||||| |||
Sbjct 8647 GTTTTGGTAATTTTACCATTCCTTCAGGCGTCGAATCAAAATTTAATACTAAGCCATATC 8706
Query 880 CTTACGATGATGCCGGTTATTTTGTTAATTTTGCTGAAGAAT--TTTATACAGTAACGTC 937
| ||| | || |||||||| ||||||| | ||||| ||||| | | ||
Sbjct 8707 AATGCGACGCGAATGGCTATTTTGTAAATTTTGAT--AGAATACTTTATTTATGTTCTTC 8764
Query 938 CTATCCTTGCATTTCTATATTTGCAGAAAGGATTATGAGAGACATGGCGTTTACTGAGAA 997
||||| || |||||||| ||||| || | || ||| | ||| | || |||||| ||
Sbjct 8765 ATATCCATGTATTTCTATTTTTGCTGAGCGTATAATGCGTGACCTCGCTTTTACT---AA 8821
Query 998 TAATCGAG---TCGGTGAAGCTTGGTCACCTAATGATATCGAGCAAGAATGGAACACTCG 1054
|||| || | ||||| | ||| | || || || | || || | ||||| || ||
Sbjct 8822 AAATCCAGATATTGGTGAGGAATGGGCTCCAAACGAATTAGAACATGTTTGGAATACACG 8881
Query 1055 GTGTCTAGGATATGCCCCATCCGTAGAATTGCCTTCATTACAGTTGCAAATACTGAATAT 1114
||| |||| ||||| || ||| | || | | || | | | | ||
Sbjct 8882 CTGTATAGGTTATGCTCCTAGTGTAATTATACCCGCTATGCAATCTTCAGTGTTTGATCG 8941
Query 1115 GGCGGGTATATCTTCTGAAAATTTTCCTTCGGATTGTGAAGGTTTACTTATAAATATTAG 1174
|| || ||| || || |||||||| |||| | | | || || || || ||
Sbjct 8942 AGCCATGATTACTTGAGATAACTTTCCTTCTGATTATTCGACTCTTCTCATTAACATAAG 9001
Query 1175 ATTGTTAAATTCTATTCAAAAATATTTACTTGAAATACCTAGCTTTGAATCAGGTCCTAT 1234
|| | |||| ||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 9002 GTTAATGAATTAAATTCAAAAATATTTAACTGAAATACCTAGCTTCGAATCTGGTCCTAA 9061
Query 1235 TCCTGCTAATTTAACTGGCTCGTTAGGTCAGTTTGTTGTTGAAGAA 1280
|| |||||||||||||| || ||||| ||||||||| | |||||
Sbjct 9062 ACCCGCTAATTTAACTGGTTCATTAGGCCAGTTTGTTATGCAAGAA 9107
>seq6
Length=1101701
Score = 80.6 bits (88), Expect = 3e-12
Identities = 106/146 (73%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 610 ATAATTTTTGTTCAC--ATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGC 667
||| ||||| ||| | | | ||||||||| || | |||||||||| ||| ||||||
Sbjct 269165 ATATTTTTTATTCGCTCACAATTTAAATTTTAAAAGATCTGTTTCATCATCCGCTTATGC 269224
Query 668 CTATTATATTTCTGTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATA 727
|||||||||| |||| || | ||||| | || ||||||||||| | | | ||| ||
Sbjct 269225 CTATTATATTGCTGTATTGTCATGGGCGCGCGTATTACATTTAAAAAGATGGAGTAAGTA 269284
Query 728 TCGCCTAACGACAAATGAGATTGAAT 753
| | | ||| | | || |||||||
Sbjct 269285 TAGGCCAACTAATGAAGAAATTGAAT 269310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5307108345200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |