Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_032907.1
Length=13109
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 113 4e-21
>seq44943
Length=2415
Score = 113 bits (124), Expect = 4e-21
Identities = 225/329 (68%), Gaps = 7/329 (2%)
Strand=Plus/Minus
Query 8129 CAAACTGGAAAGAATTCCT-AACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTT 8187
|||| |||||| ||| | ||||| || ||||| ||||| || | | |||||||
Sbjct 956 CAAATCGGAAAGT-TTCTTCAACAG--GTCAATGATAATGGAACTGAGTTAGGGCATCTT 900
Query 8188 GTAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTT 8247
|||| ||| | | | || || || | |||||| | || |||| || | |
Sbjct 899 ATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTA 840
Query 8248 ATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTC 8307
||||| |||| || ||||| ||||| || | | || ||||| || || || |||
Sbjct 839 ATGTCTTGGACACTAAGAGACTACTTTGTCACT---GAGTATTTGATAAAGAATCACTTC 783
Query 8308 GTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTG 8367
|| || ||||| | |||| |||| |||||||||||| ||| || || | ||||| |||
Sbjct 782 GTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATG 723
Query 8368 CTCGATACATCTAATGGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAATCAT 8427
| || | || | || |||||||| || | ||||| || || | || ||||| ||
Sbjct 722 ATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCAC 663
Query 8428 ATAGATTATGAGAAATGGAATAACCATCA 8456
|||| || ||||| || |||||||| ||
Sbjct 662 CTAGACTACGAGAAGTGTAATAACCACCA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 41788480841120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |