Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq44943 113 4e-21 >seq44943 Length=2415 Score = 113 bits (124), Expect = 4e-21 Identities = 225/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 8129 CAAACTGGAAAGAATTCCT-AACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTT 8187 |||| |||||| ||| | ||||| || ||||| ||||| || | | ||||||| Sbjct 956 CAAATCGGAAAGT-TTCTTCAACAG--GTCAATGATAATGGAACTGAGTTAGGGCATCTT 900 Query 8188 GTAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTT 8247 |||| ||| | | | || || || | |||||| | || |||| || | | Sbjct 899 ATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTA 840 Query 8248 ATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTC 8307 ||||| |||| || ||||| ||||| || | | || ||||| || || || ||| Sbjct 839 ATGTCTTGGACACTAAGAGACTACTTTGTCACT---GAGTATTTGATAAAGAATCACTTC 783 Query 8308 GTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTG 8367 || || ||||| | |||| |||| |||||||||||| ||| || || | ||||| ||| Sbjct 782 GTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATG 723 Query 8368 CTCGATACATCTAATGGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAATCAT 8427 | || | || | || |||||||| || | ||||| || || | || ||||| || Sbjct 722 ATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCAC 663 Query 8428 ATAGATTATGAGAAATGGAATAACCATCA 8456 |||| || ||||| || |||||||| || Sbjct 662 CTAGACTACGAGAAGTGTAATAACCACCA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41788480841120