Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_033006.1
Length=11332
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 89.7 4e-14
>seq44943
Length=2415
Score = 89.7 bits (98), Expect = 4e-14
Identities = 162/235 (69%), Gaps = 9/235 (4%)
Strand=Plus/Minus
Query 6421 GGTAGATTCTACTGCCTAATGTCCTGGGCCTTGAGGGAATATTTTGTCGTCACTGAGTAT 6480
|| ||||| | || ||||||| ||| | | || || || |||||| |||||||||
Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTAT 801
Query 6481 TTGATTAAATTACATTTTATTCCTCTTTTTAAGGGTCTGACTGTCGCTGATGACATGACA 6540
||||| || || || |||| || ||| | || || || | || ||||| | |||
Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741
Query 6541 ACACTAATCAAGAAGATGATGGATAATTCTTCAGGACAAGGATTAGATGATT---ATTCC 6597
|| |||| || ||||||||||| | || | |||||| | ||||| | | | |
Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATAC 681
Query 6598 AGAGTTTCTTATGCGAACCATTTAGATTATGAGAAGTGGAATAACTATCAGCGTA 6652
| ||||| || ||||| |||| || |||||||| |||||| | |||||||
Sbjct 680 A---TTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCGTA 629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36111955124480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |