Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_033006.1 Length=11332 Score E Sequences producing significant alignments: (Bits) Value seq44943 89.7 4e-14 >seq44943 Length=2415 Score = 89.7 bits (98), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 6421 GGTAGATTCTACTGCCTAATGTCCTGGGCCTTGAGGGAATATTTTGTCGTCACTGAGTAT 6480 || ||||| | || ||||||| ||| | | || || || |||||| ||||||||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTAT 801 Query 6481 TTGATTAAATTACATTTTATTCCTCTTTTTAAGGGTCTGACTGTCGCTGATGACATGACA 6540 ||||| || || || |||| || ||| | || || || | || ||||| | ||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6541 ACACTAATCAAGAAGATGATGGATAATTCTTCAGGACAAGGATTAGATGATT---ATTCC 6597 || |||| || ||||||||||| | || | |||||| | ||||| | | | | Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATAC 681 Query 6598 AGAGTTTCTTATGCGAACCATTTAGATTATGAGAAGTGGAATAACTATCAGCGTA 6652 | ||||| || ||||| |||| || |||||||| |||||| | ||||||| Sbjct 680 A---TTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCGTA 629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36111955124480