Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq44943 105 6e-19 >seq44943 Length=2415 Score = 105 bits (116), Expect = 6e-19 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 8046 GGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAATAT 8105 ||| | || |||| ||||||||||||| || ||||| || ||||| | |||| ||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTAT 801 Query 8106 CTCATAAA-AACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTTAGT 8164 | ||||| || | || |||| || ||||| ||| |||||||||| ||||| ||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCC-CTCTTTTACGGACTAACAATGGCAGATGATTTAAC 742 Query 8165 TACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACAAGGATTGGATAATTATGATGT 8224 ||||| |||| ||| ||| | |||| || || |||||| | ||| | || || Sbjct 741 AACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATA 682 Query 8225 GATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACG 8275 || | | | || || ||| | || || ||||| || ||||||||||| || Sbjct 681 CATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41444350764320