Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_033070.1 Length=11145 Score E Sequences producing significant alignments: (Bits) Value seq44943 78.8 7e-11 >seq44943 Length=2415 Score = 78.8 bits (86), Expect = 7e-11 Identities = 156/227 (69%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 6163 AAGTTTTTGAAACAGGTTAATGACACAGGTATATCAGA-AGATCATCTGATCATTGGATT 6221 |||||| | ||||||| ||||| | || | | || || ||||| || ||||| || Sbjct 947 AAGTTTCTTCAACAGGTCAATGATAATGGAAC-TGAGTTAGGGCATCTTATAATTGGGTT 889 Query 6222 AAGAGCAAAAGAGCGAGAACTTAAAGAAGAAGGAAGGTTCTTTGCACTTATGTCTTGGGA 6281 || | ||| | || | | ||| | ||||| || ||| | ||||||||| Sbjct 888 AAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTAATGTCTTGGAC 829 Query 6282 AATCAGAGATTATTTTGTGATGACAGAGTATCTTATCAAAACACACTTTGTACCTCTGTT 6341 | | ||||| || ||||| | | |||||| | || || | ||||| || || || || Sbjct 828 ACTAAGAGACTACTTTGTCA---CTGAGTATTTGATAAAGAATCACTTCGTTCCCCTCTT 772 Query 6342 CAAAGGTCTGACAATGGCAGACGATTTGACAACTGTAATCGGAAAAA 6388 | || || ||||||||||| ||||| ||||||||||| |||||| Sbjct 771 TTACGGACTAACAATGGCAGATGATTTAACAACTGTAAT--GAAAAA 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35514138586920