Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_033103.1 Length=13161 Score E Sequences producing significant alignments: (Bits) Value seq44943 147 2e-31 >seq44943 Length=2415 Score = 147 bits (162), Expect = 2e-31 Identities = 328/484 (68%), Gaps = 19/484 (4%) Strand=Plus/Minus Query 7937 TACCAGATATGATAGATCCATCAGTGATTTACTCAGATAGAAGTCACTCAATGACTCGTG 7996 ||||| ||| |||||||||||| | || || ||||||| |||||||| |||||| | Sbjct 1101 TACCATATAAGATAGATCCATCTATTATATATTCAGATAAGAGTCACTCTATGACTAGAA 1042 Query 7997 ATGAAATCATAAACCATTTAACAACAAACCCCGGTATGCCGATACCATCACGGAAAGTCC 8056 ||| |||| | ||| | ||| || || || || ||||| || | ||||| | Sbjct 1041 GTGAGGTCATTAGAGCTTTTAGAACGT--CCAGGAATTCCTATACCCTCTAGAAAAGTTC 984 Query 8057 TGACCACCTTACTGCATTCTGATACGACGGATTGGAAAGCTTTTCTGGAGAGAGTAGACA 8116 | ||| | || || | | | || |||||| ||||| | | || | || Sbjct 983 TTACCTGTTAACATCACCGGCCTTCCGCAAATCGGAAAG--TTTCTTCA-ACAG--GTCA 929 Query 8117 AATATGGATTAGATCTGAATGAG-----CTTGTCATCGGTCTCAAAGAAAAGGAGCGAGA 8171 | || | | || |||| | || ||| | || || | ||| | || | || | Sbjct 928 ATGAT--AATGGAACTGAGTTAGGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACA 871 Query 8172 AATAAAAAAGAAGGGACGGTTTTTCTCATTGATGTCCTGGAGTCTTCGAGATTATTTTGT 8231 || ||| |||||| | || || | || ||||| |||| || |||| || ||||| Sbjct 870 GATCAAACTCAAGGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGT 811 Query 8232 GGTGACTGAGTATTTAATAAAGAAACACTTTGTTCCACTATTCTATGGTCTGACAATGGC 8291 ||||||||||| |||||||| ||||| ||||| || || || || || |||||||| Sbjct 810 C---ACTGAGTATTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGC 754 Query 8292 CGATGATCTCACGACCGTGATGAGGAAGATGATGGAGAATGCAAATGGAC-AGGGTCTGG 8350 |||||| | || || || |||| ||||||||||| | | | || || ||||||| | Sbjct 753 AGATGATTTAACAACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCT-G 695 Query 8351 ATGATTATAGCTATATTTCTATTGCTAATCACATTGATTATGAGAAGTGGAATAATCACC 8410 |||| || || |||||||| || || ||| | || || |||||||| ||||| |||| Sbjct 694 ATGACTACGAATACATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACC 635 Query 8411 AACG 8414 | || Sbjct 634 AGCG 631 Score = 98.7 bits (108), Expect = 8e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 8626 CAAAAGGGATGGAGTATACTAAACCTGCTAGTAATCAGACGCGAAGGTAGTCACCGCAAC 8685 || ||||| ||||||||| | || || ||| || | | || |||||| | | ||| Sbjct 323 CAGAAGGGCTGGAGTATAATGAATCT--TAGCCATTCGTAGAGAGGGTAGTTTCGGAAAC 266 Query 8686 ACAAAGATAAAATGCCTGGCCCAGGGAGATAACCAGGTGATCTGCACTCAGT-ATGAATT 8744 ||||| || |||||||||||||| || || |||||||||||||||| ||||| | |||| Sbjct 265 ACAAATATGAAATGCCTGGCCCAAGGTGACAACCAGGTGATCTGCA-TCAGTTACAAATT 207 Query 8745 ACAAAAGTCTCGATCAGATCAGGAAATGGAGGAAAATATATTGAAAGTTGTACAGAACAA 8804 |||||||| || | || || || | | | ||| || || ||| | ||||| | Sbjct 206 ACAAAAGTTCCGCACGGACCAAGAGCTTCAAGTAAACATTGATAACGTTAT-CAGAAACA 148 Query 8805 TCAG-GTAATTTTAGCCAAAATTGAAGAGGGTACAAGGAAATTAGGGCTTA 8854 ||| | ||| ||| | ||||| ||||||| |||| | ||||||| Sbjct 147 ACAGCGCAATCTTAAAAAGGATTGAGAAGGGTACTCAGAAACTTGGGCTTA 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41954714088040