Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_033486.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value seq27831 361 6e-97 seq1067 298 6e-78 >seq27831 Length=5066 Score = 361 bits (400), Expect = 6e-97 Identities = 421/564 (75%), Gaps = 22/564 (4%) Strand=Plus/Plus Query 397 TCGAATAATCCAAAAGCAAATGTTCGTAATCCCGTCGAATTAAAAGAAGAAACACCGAAG 456 || || || |||||| |||||||||| ||| | ||| ||||||| ||| | Sbjct 307 TCCAACAAGCCAAAATATAATGTTCGTAGTCCAATTGAAGCAAAAGAA-AAATAT----- 360 Query 457 CCAACAACTATGCCAACTGGCCAACATTTGTCAAAAACAAATTCTGAGTTTAAAAATGAT 516 |||||||| ||||| |||||||| |||||||| ||||||||||| ||||| || Sbjct 361 ------ACTATGCCTACTGGACAACATTTATCAAAAACTAATTCTGAGTTGAAAAACAAT 414 Query 517 CCTTTATATTTAGAAGCATTCATGCCTTCTCCTTCCGAGGAGTTGGTTCCAAT--AGCCG 574 || | ||||||||||| || | |||||||| | || || || ||| | | | Sbjct 415 CCCCTTTATTTAGAAGCGTTTTTCCCTTCTCCATTTGAAGAATTAAG---AATTAAACAG 471 Query 575 AAGAGTTAAATCATTTTCCGGGTTTTGATGGTTTAACCACATTAATTGAAGAAACATATG 634 ||||||||||| ||||| ||||||||| |||||||| | |||||| | ||||| |||| Sbjct 472 AAGAGTTAAATGATTTTTTGGGTTTTGACGGTTTAACTTCGTTAATTAATGAAACTTATG 531 Query 635 AAAATTTTTCTGCACATAATTTAAACTTTAAACGTTCTGTATCTTTATCTGCTTATTCTT 694 ||||||||| || ||||| | || ||||||||||| | || ||||| ||||| || Sbjct 532 AAAATTTTTGCGCCTATAATCTTAATTTTAAACGTTCAATTTCATTATCAGCTTACCTTT 591 Query 695 ATTATATTACTGTTTTGTCTTGGGCCCGTGTTTTATATTTGAAGAAAATGAATAAATATA 754 |||||||| ||||| | || || || | |||||||| || || || |||| ||||| Sbjct 592 ATTATATTGCTGTTCTATCCTGCGCTAGAATTTTATATAATAATAATAT-AATACATATA 650 Query 755 AATTAACTACTAACGAATTGGAGTTTATTGAAATGGTTTATGAACAAGGCAATTTCTTAT 814 ||||||||| ||| | || ||| |||| ||| |||||||||| || || | ||| Sbjct 651 GATTAACTACAGTTGAAATAGAATTTGTTGATATGATTTATGAACAGGGTAACTATTTAC 710 Query 815 TACCTAAGAGTGTAATAATTTATCTTTCTGGTTTTGGTAATTTTAACATCCCTTCAGGCG 874 | ||||| ||||| | |||||||||||||||||||||||||||| ||| |||||||||| Sbjct 711 TTCCTAAAAGTGTTACTATTTATCTTTCTGGTTTTGGTAATTTTACCATTCCTTCAGGCG 770 Query 875 TTGAATCAAAATTTAATTTAAAACCATATACTTATGA--CGAATTAGGATATTTTGTAGA 932 | ||||||||||||||| || |||||| | || ||||| || ||||||||| | Sbjct 771 TCGAATCAAAATTTAATACTAAGCCATATCAACACGACGCGAAT--GGTTATTTTGTAAA 828 Query 933 CTTTGACACGAAATTTTATTTATG 956 ||||| | | |||||||||| Sbjct 829 TTTTGATAGATTACTTTATTTATG 852 >seq1067 Length=159154 Score = 298 bits (330), Expect = 6e-78 Identities = 411/573 (72%), Gaps = 20/573 (3%) Strand=Plus/Plus Query 725 TTTTATATTTGAAGAAAATGAATAAATATAAATTAACTACTAACGAATTGGAGTTTATTG 784 ||||| || | |||| | | |||||||||| ||||||||| | ||| | || ||| ||| Sbjct 8539 TTTTACATCTTAAGAGATTAAATAAATATAGATTAACTACAGATGAAATAGAATTTGTTG 8598 Query 785 AAATGGTTTATGAACAAGGCAATTTCTTATTACCTAAGAGTGTAATAATTTATCTTTCTG 844 | ||| ||||| || | || || | ||| | |||| |||||| ||| Sbjct 8599 ATATGATTTATCAAGAGGGTAACTATTTACTTCCTA------------TTTATCCTTCCT 8646 Query 845 GTTTTGGTAATTTTAACATCCCTTCAGGCGTTGAATCAAAATTTAATTTAAAACCATATA 904 ||||||||||||||| ||| ||||||||||| ||||||||||||||| || |||||| Sbjct 8647 GTTTTGGTAATTTTACCATTCCTTCAGGCGTCGAATCAAAATTTAATACTAAGCCATATC 8706 Query 905 CTTATGA--CGAATTAGGATATTTTGTAGACTTTGACACGAAATTTTATTTATGCACAAG 962 | || ||||| || ||||||||| | ||||| | | | |||||||||| | Sbjct 8707 AATGCGACGCGAAT--GGCTATTTTGTAAATTTTGATAGAATACTTTATTTATGTTCTTC 8764 Query 963 TTATCCTAATATTTCTATTGCTGCTGAACGTGTAATGCGCGATTTAGCATACACTGACAA 1022 ||||| |||||||||| |||||| ||| ||||||| || | || | ||| | || Sbjct 8765 ATATCCATGTATTTCTATTTTTGCTGAGCGTATAATGCGTGACCTCGCTTTTACTAAAAA 8824 Query 1023 TCCTGAAATTGGTGAAGCTTGGTCACCAGCCGAAATTGAACAAGAGTGGAATACTCGCTG 1082 ||| || |||||||| | ||| | ||| |||| | ||||| | |||||||| ||||| Sbjct 8825 TCCAGATATTGGTGAGGAATGGGCTCCAAACGAATTAGAACATGTTTGGAATACACGCTG 8884 Query 1083 TATTGGTTACGCACCTTCCGTTATAATTCATGATATGCAACGTGCCGTATTAGAACGTGC 1142 ||| ||||| || ||| || || || | | ||||||| | | || || || || || Sbjct 8885 TATAGGTTATGCTCCTAGTGTAATTATACCCGCTATGCAATCTTCAGTGTTTGATCGAGC 8944 Query 1143 GCTCGTTCGCTCTGATAATTTTCCTTCTGATTTAAATGG--TTTTCTTGTTAATGTTAGA 1200 | || | ||||| ||||||||||||| | | | | |||| |||| | || Sbjct 8945 CATGATTACTTGAGATAACTTTCCTTCTGATT--ATTCGACTCTTCTCATTAACATAAGG 9002 Query 1201 TTAATGAATAATATTCAAAAATATTTGTCCGAAATACCAAGCTTAGAGTCCGGTCCTATT 1260 ||||||||| | |||||||||||||| | |||||||| ||||| || || ||||||| Sbjct 9003 TTAATGAATTAAATTCAAAAATATTTAACTGAAATACCTAGCTTCGAATCTGGTCCTAAA 9062 Query 1261 CCTAAGAATCTAACTGGTTCTTTAGGTCAGTTT 1293 || ||| |||||||||| ||||| |||||| Sbjct 9063 CCCGCTAATTTAACTGGTTCATTAGGCCAGTTT 9095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5236773174360