Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq194978 215 1e-53 seq121653 190 4e-46 seq122191 187 5e-45 seq194959 134 3e-29 seq149210 131 3e-28 seq115184 131 3e-28 seq194357 105 1e-20 seq123339 78.8 2e-12 >seq194978 Length=1758 Score = 215 bits (238), Expect = 1e-53 Identities = 253/336 (75%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||||||||| |||| ||| | ||||||| | | ||||||| Sbjct 368 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGACACCTACAAACAGACGGAGCCCAA 310 Query 61 GAGTGATTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || | ||| ||||||| ||| ||||||| || ||| ||| ||| ||| | | || | Sbjct 309 GATTAGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAATT-TAACGA 251 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 || || |||| | ||| ||| || || ||||||||| ||||| |||||| | Sbjct 250 GCAAGCTTAAACCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTTAATAGGGCGCCA 195 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| || | ||||| |||||||| |||||||| ||| ||||||||||||| | ||| Sbjct 194 AGTTCGTTGTATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGT 135 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| | ||||||||||||| ||| |||||||| || ||||||| | || || Sbjct 134 AACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCGATGACTTGTGGTTA 75 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||||||||||||| || Sbjct 74 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGT 39 >seq121653 Length=1795 Score = 190 bits (210), Expect = 4e-46 Identities = 244/332 (73%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| |||||||||| || |||||| Sbjct 1434 CCCGATGAGGGGAGTGAAACAGTACCTGAAACCGATTGCCTACAAGCAGTGGGAGCCTCT 1493 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || |||||| |||| ||| |||||||||| | || || ||| | || | ||| || Sbjct 1494 TTATGGGGTGACCGCGTACCTCTTGCATAATGGGTCTGTGACTTAAT-GTATCAAGCAAG 1552 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTT 182 ||||| | ||| ||| || || ||||||||| || || ||||||| |||| Sbjct 1553 CTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGATTTAGTT 1608 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 | | ||||| ||||||| | |||||| || || |||| ||||| | |||||| Sbjct 1609 TGATGTATTAGACCCGAAACCCGGCGATCTAGGCATGACCAGGATGAAGGTGGGGTAACA 1668 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 | |||||| |||||||| | |||||||||||||| ||||||| | | | |||||| Sbjct 1669 CCCACTGGAGGTCCGAACCGATTAACGTTGAAAAGTTACCGGATGAGTTGTGTTTAGGGG 1728 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||| | ||||||||||| || Sbjct 1729 TGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 1760 >seq122191 Length=2357 Score = 187 bits (206), Expect = 5e-45 Identities = 246/335 (73%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| | | |||||||||| || |||| | Sbjct 369 CCCGATGAGGGGAGTGAAACAGTACCTGAAACGGATTGCCTACAAGCAGTTGGAGG---G 313 Query 64 TGATTCGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 | || | |||| |||| ||| |||||||||| | || || ||| | || | ||| Sbjct 312 TCCTTGAGGCCTGACAGCGTACCTCTTGCATAATGGGTCTGTGACTTAAT-GTATCAAGC 254 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-A 179 || ||||| | ||| ||| || || ||||||||| || || |||||||| | Sbjct 253 AAGCTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGACTTA 198 Query 180 GTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239 ||| | | ||||| ||||||| | |||||| || || |||| ||||| |||||| Sbjct 197 GTTTGATGTATTAGACCCGAAACCCGGCGATCTAGGCATGACCAGGATGAAGGTGCGGTA 138 Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 || || |||||| |||||||||| |||||||||||||| |||||||| | | | ||| Sbjct 137 ACACGCACTGGAGGTCCGAACCGGTTAACGTTGAAAAGTTATCGGATGAGTTGTGTTTAG 78 Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||| | ||||||||||| || Sbjct 77 GGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 43 >seq194959 Length=11641 Score = 134 bits (148), Expect = 3e-29 Identities = 227/326 (70%), Gaps = 11/326 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| || |||||| | | Sbjct 9100 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTAGGAGCCC---GCAAGG 9156 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || ||||||| Sbjct 9157 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 9215 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG--AGTTGGTGGC 188 | | || ||||| || |||| |||| | || ||||||| ||| | ||| Sbjct 9216 GAATAGGGA-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGAATTTAGTCGCTGGG 9270 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || | Sbjct 9271 TGTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACT 9330 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||||||| | |||| ||| | |||||| | || |||||||||||| Sbjct 9331 GGAGGTCCGAACCCACTAGTGTTGCAAAACTAGGGGATGAGCTGTGGATAGGGGTGAAAG 9390 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || || |||||| |||||||||| || Sbjct 9391 GCTAAACAAACTTGGAAATAGCTGGT 9416 >seq149210 Length=2481 Score = 131 bits (144), Expect = 3e-28 Identities = 228/328 (70%), Gaps = 13/328 (4%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC---CGAGTGAT 67 ||||| |||||||||| |||||| || || ||||| | || ||||| | ||| | Sbjct 1040 AGGGGAGTGAAATAGATCCTGAAATCGTATGCATACAAACAGTAGGAGCACCCTCGTGGT 1099 Query 68 TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || ||| Sbjct 1100 ---GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTA 1155 Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTG 186 | | | || || || || ||||||||| | || |||||| ||| | || Sbjct 1156 ACCGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGGTTCAGTCGCTG 1210 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 | ||||| ||||||| | |||||| ||| | |||||||||| | ||||||| |||| Sbjct 1211 GGTGTAGACCCGAAACCAGGCGATCTATCCATGGCCAGGTTGAAGGCACGGTAACACGTG 1270 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||||||||||| || |||||||| || |||||| | || | || ||||| Sbjct 1271 CTGGAGGACCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGATCGGAGTGAA 1330 Query 307 AGGCCAATCAAACTGGGAAATAGCTCGT 334 |||| || ||| | ||| |||||| || Sbjct 1331 AGGCTAAACAAGCCTGGAGATAGCTGGT 1358 >seq115184 Length=93111 Score = 131 bits (144), Expect = 3e-28 Identities = 228/328 (70%), Gaps = 13/328 (4%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC---CGAGTGAT 67 ||||| |||||||||| |||||| || || ||||| | || ||||| | ||| | Sbjct 67819 AGGGGAGTGAAATAGATCCTGAAATCGTATGCATACAAACAGTAGGAGCACCCTCGTGGT 67760 Query 68 TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || ||| Sbjct 67759 ---GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTA 67704 Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTG 186 | | | || || || || ||||||||| | || |||||| ||| | || Sbjct 67703 ACCGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGGTTCAGTCGCTG 67649 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 | ||||| ||||||| | |||||| ||| | |||||||||| | ||||||| |||| Sbjct 67648 GGTGTAGACCCGAAACCAGGCGATCTATCCATGGCCAGGTTGAAGGCACGGTAACACGTG 67589 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||||||||||| || |||||||| || |||||| | || | || ||||| Sbjct 67588 CTGGAGGACCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGATCGGAGTGAA 67529 Query 307 AGGCCAATCAAACTGGGAAATAGCTCGT 334 |||| || ||| | ||| |||||| || Sbjct 67528 AGGCTAAACAAGCCTGGAGATAGCTGGT 67501 >seq194357 Length=1599 Score = 105 bits (116), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||||||| |||||| ||| | ||||||| | | ||||||| Sbjct 1390 CCCGACGAGGGGAGTGAAATAGA-CCTGAAACCGGACACCTACAAACAGACGGAGCCCAA 1448 Query 61 GAGTGATTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || | ||| ||||||| ||| ||||||| || ||| ||| ||| ||| | | || | Sbjct 1449 GATTAGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAAT-TTAACGA 1507 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 || || |||| | ||| ||| || || ||||||||| ||||| |||||| | Sbjct 1508 GCAAGCTTAA-ACCGATAGG---TGTAGGCGTAGCGAAAGCGAGTCTTAATAGGGCGCCA 1563 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTA 213 |||| || | ||||| |||||||| |||||||| Sbjct 1564 AGTTCGTTGTATTAGACCCGAAACCTAGTGATCTA 1598 >seq123339 Length=2740 Score = 78.8 bits (86), Expect = 2e-12 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 224 GGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCG 283 |||||||| | ||||||| |||| |||||||||||||| || |||||||| || | Sbjct 17 GGTTGAAGGCACGGTAACACGTGCTGGAGGACCGAACCCACTAATGTTGAAAAATTAGGG 76 Query 284 GATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||| | || | || ||||||||| || ||| | ||| |||||| || Sbjct 77 GATGAGCTGTGGATCGGAGTGAAAGGCTAAACAAGCCTGGAGATAGCTGGT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 970902222848