Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq115184 165 6e-39 seq194959 120 2e-25 seq121170 84.2 2e-14 seq122191 77.0 2e-12 seq121653 77.0 2e-12 >seq115184 Length=93111 Score = 165 bits (182), Expect = 6e-39 Identities = 109/121 (90%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||||||||| || |||||||||||||||| Sbjct 68974 TACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCCCACCGTGGTAAGCGCCCTCC 69033 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 | ||||| ||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 69034 TTACGGTTAGGCTACCTACTTCTGGTGAAACCCACTCCCATGGTGTGACGGGCGGTGTGT 69093 Query 138 A 138 | Sbjct 69094 A 69094 >seq194959 Length=11641 Score = 120 bits (132), Expect = 2e-25 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||| | ||||||| |||||||| Sbjct 7952 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCTGCCGTGGTAATCGCCCTCC 7893 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||| |||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 7892 TTGCGGTTAGGCTAACTACTTCTGGCAGAACCCGCTCCCATGGTGTGACGGGCGGTGTGT 7833 Query 138 A 138 | Sbjct 7832 A 7832 >seq121170 Length=1835 Score = 84.2 bits (92), Expect = 2e-14 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| | | | ||||| ||| || Sbjct 1031 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTTAGCTGCC 1090 Query 75 TCCCGAAGGTTAAGCTACCTAC-TTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGT 133 || ||||| || |||| ||| | |||| ||||||||||||||||||||||| Sbjct 1091 CCCTTGCGGTTA-GCGCACTACCTTCAGGTAAAACCAACTCCCATGGTGTGACGGGCGGT 1149 Query 134 GTGTA 138 ||||| Sbjct 1150 GTGTA 1154 >seq122191 Length=2357 Score = 77.0 bits (84), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73 |||||||| ||||||||| |||||||||||||||| || | || ||||| | ||| Sbjct 1699 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAACCCACCGTGGTCGCCTGCC 1758 Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | |||| | | |||| || | || |||||||||||||||||||||| Sbjct 1759 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAATCCAACTCCCATGGTGTGACGGGCGG 1818 Query 133 TGTGTA 138 |||||| Sbjct 1819 TGTGTA 1824 >seq121653 Length=1795 Score = 77.0 bits (84), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGC-GCC 73 |||||||| ||||||||| |||||||||||||||| || | || ||||| | ||| Sbjct 190 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAGCCCACCGTGGTCGCCTGCC 131 Query 74 -CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | |||| | | |||| || | || |||||||||||||||||||||| Sbjct 130 TCTCTTGCGAGTTAGCGCAACGCCTTCGGGTGAACCCAACTCCCATGGTGTGACGGGCGG 71 Query 133 TGTGTA 138 |||||| Sbjct 70 TGTGTA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344967927840