Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq149210 104 2e-20 seq115184 104 2e-20 seq194959 100 3e-19 seq52333 91.5 1e-16 seq194978 73.4 4e-11 seq194357 73.4 4e-11 seq121170 73.4 4e-11 >seq149210 Length=2481 Score = 104 bits (114), Expect = 2e-20 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | | ||||||||| ||| || |||||| |||||||| | || ||||||||||| Sbjct 565 GCATATGATGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGTAGCCTGCGAAAAGC 624 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||||| ||||| | | | ||||||||||||| ||||||||||| ||||| Sbjct 625 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCC 678 >seq115184 Length=93111 Score = 104 bits (114), Expect = 2e-20 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | | ||||||||| ||| || |||||| |||||||| | || ||||||||||| Sbjct 68294 GCATATGATGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGTAGCCTGCGAAAAGC 68235 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||||| ||||| | | | ||||||||||||| ||||||||||| ||||| Sbjct 68234 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCC 68181 >seq194959 Length=11641 Score = 100 bits (110), Expect = 3e-19 Identities = 136/185 (74%), Gaps = 16/185 (9%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| |||| Sbjct 8634 GGTGGATGCCTTGGCGATTACAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 8693 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC---------GAT 117 || ||||| ||| | ||||||||| |||| || |||||||| ||||| || Sbjct 8694 GAGCTGGCAAATAAGCATTGATCCGGAGATTTCTGAATGGGGAAACCCACCTCGCAAGAG 8753 Query 118 ATATTGGAGA-TATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCT 175 ||| | | | | || |||| | || ||| |||||||| || |||||||||||||| Sbjct 8754 GTATCGCATACTGAATACATA--GGTATGCG--AGGCGAACCGGGTGAACTGAAACATCT 8809 Query 176 AAGTA 180 |||| Sbjct 8810 CAGTA 8814 >seq52333 Length=5662 Score = 91.5 bits (100), Expect = 1e-16 Identities = 132/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | ||||||| |||||||| || ||||| ||||| |||| Sbjct 5107 GGTGGATGCCTTGGCAGTAAGAGGCGATAAAGGACGTAGTAGCTTGCGATAAGCTTCGGG 5048 Query 68 GAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 | ||||| | | | | ||||||| |||| |||||||||| ||||| | | ||| | Sbjct 5047 AAGCTGGCAAACAAGCAATGATCCGGAGATTTCCGAATGGGAAAACCCAACCTTTTGAGG 4988 Query 127 ATAT-AT---CATAACGC-TAGG--CGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 ||| || | || | |||| | | | |||||| ||| |||||||||||||||||| Sbjct 4987 TTATTATGTGCTAAATTCATAGGTACATAAAGCGAACCTGGAGAACTGAAACATCTAAGT 4928 Query 180 A 180 | Sbjct 4927 A 4927 >seq194978 Length=1758 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| | ||||||| |||||||||| || ||||||| |||| || Sbjct 882 CGGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGG 823 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 822 GGAGCTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 775 >seq194357 Length=1599 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| | ||||||| |||||||||| || ||||||| |||| || Sbjct 876 CGGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGG 935 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 936 GGAGCTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 983 >seq121170 Length=1835 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| | ||||||| |||||||||| || ||||||| |||| || Sbjct 122 CGGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGG 63 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 62 GGAGCTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475898907004